iSAFE specifications

Unique identifier:
OMICS_20823
Restrictions to use:
None
Input format:
hap, vcf
Operating system:
Unix/Linux
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
Name:
integrated Selection of Allele Favored by Evolution
Input data:
A binary SNP matrix with each row corresponding to a haplotype and each column to a mutation, and entries corresponding to the allelic state.
Output data:
A non-negative iSAFE-score for each mutation, according to its likelihood of being the favored variant of the selective sweep.
Programming languages:
Python
Version:
0.1
Requirements:
numpy, pandas, bcftools

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

iSAFE distribution

download

iSAFE support

Maintainer

  • Ali Akbari <>

forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Institution(s)

Department of Electrical & Computer Engineering, University of California, San Diego, La Jolla, CA, USA; Department of Computer Science & Engineering, University of California, San Diego, La Jolla, CA, USA

Funding source(s)

Supported in part by grants from the NSF (IIS-1318386 and DBI-1458557), and from the NIH (R01GM114362).

User review

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

No review has been posted.

Related Tools