ITEP specifications

Information


Unique identifier OMICS_08610
Name Integrated Toolkit for Exploration of microbial Pan-genomes
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python, Shell (Bash)
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Requirements SQLite, MCL, NCBI BLAST+, BioPython, Numpy, Ruffus, ETE2
Maintained Yes

Taxon


  • Archaebacteria
  • Eubacteria

Versioning


Add your version

Maintainer


  • person_outline Than D. Price <>

ITEP article

ITEP institution(s)
Institute for Systems Biology, Seattle, WA, USA

ITEP review

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nick_youngblut

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Desktop
ITEP has pretty good documentation and support. Setup is pretty straight-forward, but it's not integrated into conda or other package managers. ITEP is great for creating a database that can be flexibly queried with piped bash commands. The software is probably limited to 100-200 microbial genomes. Thousands of genomes would probably take too many compute resources.

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