IntegromeDB specifications


Unique identifier OMICS_11989
Name IntegromeDB
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained No


  • Primates
    • Homo sapiens


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Publication for IntegromeDB

IntegromeDB citations


Mining biomedical images towards valuable information retrieval in biomedical and life sciences

PMCID: 4990152
PMID: 27538578
DOI: 10.1093/database/baw118

[…] implemented a system in two integrated phases: () performed preliminary image processing () and () text recognition. Doing image processing, they first scanned biological and ontological terms using IntegromeDB, then with the application of mathematical morphology and binary analysis routines extracted objects and their relationships using ImageJ (), then transformed the colour image to gray scal […]


An Integrative Approach to Inferring Gene Regulatory Module Networks

PLoS One
PMCID: 3527610
PMID: 23285197
DOI: 10.1371/journal.pone.0052836

[…] s across datasets . MEM outputs a ranked list of genes that are co-expressed with the query gene in the selected collection of experiments, which is platform-specific. Due to the integrated nature of IntegromeDB, our tool can deal with multiple genes and multiple collections of experiments, basically with all microarray data from GEO and ArrayExpress in which the query gene(s) can be found. And wh […]

IntegromeDB institution(s)
San Diego Supercomputer Center, University of California San Diego, La Jolla, CA, USA
IntegromeDB funding source(s)
This work was supported by the National Institute of Health grants R01GM084881 and R01GM085325.

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