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IntelliGO specifications

Information


Unique identifier OMICS_15015
Name IntelliGO
Interface Web user interface
Restrictions to use None
Programming languages C++
Computer skills Basic
Stability No
Maintained No

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Publication for IntelliGO

IntelliGO citations

 (5)
library_books

Life and Understanding: The Origins of “Understanding” in Self Organizing Nervous Systems

2016
Front Syst Neurosci
PMCID: 5145877
PMID: 28018185
DOI: 10.3389/fnsys.2016.00098

[…] ts, followed by focused (selective) manipulations in the resulting structures (the term “cognition” derives from the Latin “cogito” meaning “to shake together”, “intelligence” derives from the Latin “intelligo” meaning “to select among”, Koestler, , p. 120). As noted earlier, the overall temperature dependency of the packet system approximates the Yerkes-Dodson law of performance (optimal levels o […]

library_books

TopoICSim: a new semantic similarity measure based on gene ontology

2016
BMC Bioinformatics
PMCID: 4966780
PMID: 27473391
DOI: 10.1186/s12859-016-1160-0

[…] r developing and running all programs. We used all the EC codes as annotation terms. The ppiPre (version 1.9), GeneSemSim (version 1.28.2), and csbl.go (version 1.4.1) packages were used to calculate IntelliGO, Wang, and SimGIC measures [–]. The DC values were estimated using the energy (version 1.6.2) package []. The SOM algorithm was performed with the SOMbrero (version 1.1) package []. All thes […]

library_books

Semantic Particularity Measure for Functional Characterization of Gene Sets Using Gene Ontology

2014
PLoS One
PMCID: 3904913
PMID: 24489737
DOI: 10.1371/journal.pone.0086525

[…] uency with which it annotates a gene using the Gene Ontology Annotations (GOA) database . GOA specifies also how each annotation has be attributed through Evidence Codes (EC). In their method called “IntelliGO”, Benabderrahmane et al. use a weighting corresponding to each GO term EC in addition to their IC . Retrieving only the most informative common ancestor to compute a semantic similarity igno […]

call_split

M Finder: Uncovering functionally associated proteins from interactome data integrated with GO annotations

2013
Proteome Sci
PMCID: 3909039
PMID: 24565382
DOI: 10.1186/1477-5956-11-S1-S3
call_split See protocol

[…] C ( t 2 ) log P ( t i ) ∑ t j ∈ C ( t 1 ) ∪ C ( t 2 ) log P ( t j ) , where C(t1) is a set of all ancestor terms of t1. IntelliGO [] integrates the edge-based method with information contents as weight. Jain and Bader [] proposed an integrative approach, called TCSS, which integrates a clustering technique with a seman […]

library_books

A Topology Based Metric for Measuring Term Similarity in the Gene Ontology

2012
Adv Bioinformatics
PMCID: 3361142
PMID: 22666244
DOI: 10.1155/2012/975783

[…] unting the number of edges in the graph to get the path between two terms [, ]. Among them, we have the longest shared path (LP) approach implemented in the GOstats package of Bioconductor [] and the IntelliGO approach suggested by Benabderrahmane et al. []. Although these approaches use only the intrinsic structure of the hierarchy under consideration, they generally suffer from the fact that the […]

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IntelliGO institution(s)
LORIA (CNRS, INRIA, Nancy-Université), Équipe Orpailleur, Campus scientifique, Vandoeuvre-lès-Nancy, France; LBGI, CNRS UMR7104, IGBMC, Illkirch Strasbourg, France
IntelliGO funding source(s)
This work was supported by the French National Institute of Cancer (INCa) and by the Region Lorraine program for research and technology (CPER MISN).

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