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Interaction confidence scoring software tools | Pathway analysis

Knowledge of all molecular interactions that potentially take place in the cell is a key for a detailed understanding of cellular processes. Currently available interaction data, such as protein-protein interaction maps, are known to contain false…
PSICQUIC
Web

PSICQUIC Proteomics Standard Initiative Common QUery InterfaCe

It was created by the Human Proteome Organization Proteomics Standards…

It was created by the Human Proteome Organization Proteomics Standards Initiative (HUPO-PSI) to enable computational access to molecular-interaction data resources by means of a standard Web Service…

HitPredict
Dataset

HitPredict

A consolidated resource of experimentally identified, physical protein-protein…

A consolidated resource of experimentally identified, physical protein-protein interactions with confidence scores to indicate their reliability. HitPredict provides a manually curated dataset of 398…

HIPPIE
Web

HIPPIE Human Integrated Protein-Protein Interaction rEference

A human PPI dataset with a normalized scoring scheme that integrates multiple…

A human PPI dataset with a normalized scoring scheme that integrates multiple experimental PPI datasets. HIPPIE's scoring scheme has been optimized by human experts and a computer algorithm to…

DASMIweb
Web

DASMIweb

Affords the integration, analysis and qualitative assessment of distributed…

Affords the integration, analysis and qualitative assessment of distributed sources of interaction data in a dynamic fashion. Since DASMIweb allows for querying many different resources of protein…

DepEst
Desktop

DepEst

Provides an R package of important dependency estimators for gene network…

Provides an R package of important dependency estimators for gene network inference algorithms. DepEst contains 11 different association estimators that works in parallel or in series programming…

IntScore
Web

IntScore

Calculates confidence scores for user-specified sets of interactions. IntScore…

Calculates confidence scores for user-specified sets of interactions. IntScore provides six network topology- and annotation-based confidence scoring methods. It also enables the integration of…

CAPPIC
Web

CAPPIC Cluster-based Assessment of Protein-Protein Interaction Confidence

A network topology based interaction confidence assessment method. CAPPIC…

A network topology based interaction confidence assessment method. CAPPIC exploits the network's inherent modular architecture for assessing the confidence of individual interactions. It…

PRINCESS
Web

PRINCESS PRotein INteraction Confidence Evaluation System with multiple Sources

A web tool to combine multiple heterogeneous biological evidences, including…

A web tool to combine multiple heterogeneous biological evidences, including model organism protein-protein interaction, interaction domain, functional annotation, gene expression, genome context,…

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