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Interactive 3D Surface Plot specifications

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Unique identifier OMICS_25535
Name Interactive 3D Surface Plot
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Programming languages Java
License GNU General Public License version 3.0
Computer skills Medium
Version 3.0.0
Stability Stable
Maintained Yes

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Interactive 3D Surface Plot citations

 (28)
library_books

Targeted inhibitors of P glycoprotein increase chemotherapeutic induced mortality of multidrug resistant tumor cells

2018
Sci Rep
PMCID: 5772368
PMID: 29343829
DOI: 10.1038/s41598-018-19325-x

[…] with 2.5 µm of calcein-am. fluorescence images were obtained every 20 minutes for a total of 100 minutes using a gfp filter. the resulting tiff image files were analyzed using imagej software and interactive 3d surface plot plugging was used to obtain 3d graphs based on the pixel intensities of images. each experiment was carried out in triplicate and the whole experiment was duplicated., […]

library_books

Spermine synthase deficiency causes lysosomal dysfunction and oxidative stress in models of Snyder Robinson syndrome

2017
Nat Commun
PMCID: 5668419
PMID: 29097652
DOI: 10.1038/s41467-017-01289-7

[…] imagej software. specifically, histogram plots in fig.  and supplementary fig.  are analyzed using imagej plot profile and surface plots in fig.  and supplementary fig.  are plotted using imagej interactive 3d surface plot plugin., for immunoblot analysis of cathepsins, tissues were homogenized on ice in lysis buffer containing 20 mm hepes, 100 mm nacl, 1 mm cacl2, 0.5% triton x-100 […]

library_books

Yeast silencing factor Sir4 and a subset of nucleoporins form a complex distinct from nuclear pore complexes

2017
PMCID: 5626528
PMID: 28883038
DOI: 10.1083/jcb.201609049

[…] through the nuclei of 50 different cells were isolated in a square region comprising 50 by 50 pixels. 3d pixel signal intensity maps of the selected squares were created using the imagej plugin interactive 3d surface plot, and the luminescence intensities of these pixels were plotted as peaks. we visually determined the mean peak heights representing the pixel intensity emitted […]

library_books

Investigation of spinal nerve ligation mediated functional activation of the rat brain using manganese enhanced MRI

2017
Exp Anim
PMCID: 5814311
PMID: 28747592
DOI: 10.1538/expanim.17-0033

[…] roi manager analysis tool was used for the value of the signal intensity of the image (image j, https://imagej.nih.gov), and the dispersion of the signal intensity of the roi was analyzed using the interactive 3d surface plot v2.32 (spectrum lut, grid size 128–512, lighting 0.27–0.8, max. 100%, min. 0%, image j, https://imagej.nih.gov)., all the results were presented as mean ± sd. the mean […]

library_books

A Cost Effective Method to Assemble Biomimetic 3D Cell Culture Platforms

2016
PLoS One
PMCID: 5147837
PMID: 27935982
DOI: 10.1371/journal.pone.0167116

[…] of health (http://imagej.nih.gov/ij/) was used to analyze sem images of the highest magnification obtained in this study (x 5000). images were analyzed in the grey scale 8-bit mode. the plug-in interactive 3d surface plot was applied with optimization of display options using the exact parameters in all compared images. additionally, we installed surfacej plugin to imagej. surfacej was used […]

library_books

A novel approach using C. elegans DNA damage induced apoptosis to characterize the dynamics of uptake transporters for therapeutic drug discoveries

2016
Sci Rep
PMCID: 5081529
PMID: 27786254
DOI: 10.1038/srep36026

[…] was utilized to determine the level of fluorescence in the pharynx region. the data of measured fluorescence intensity for doxorubicin uptake was depicted by implementing the custom built-in interactive 3d surface plot featured in imagej, which display the intensities of pixels from a region of interest of a given image. the uptake was corroborated by two means: (i) the area, […]


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