Interactive 3D Surface Plot statistics

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Citations per year

Number of citations per year for the bioinformatics software tool Interactive 3D Surface Plot

Tool usage distribution map

This map represents all the scientific publications referring to Interactive 3D Surface Plot per scientific context
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Interactive 3D Surface Plot specifications


Unique identifier OMICS_25535
Name Interactive 3D Surface Plot
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Programming languages Java
License GNU General Public License version 3.0
Computer skills Medium
Version 3.0.0
Stability Stable
Maintained Yes




No version available


Interactive 3D Surface Plot citations


Targeted inhibitors of P glycoprotein increase chemotherapeutic induced mortality of multidrug resistant tumor cells

Sci Rep
PMCID: 5772368
PMID: 29343829
DOI: 10.1038/s41598-018-19325-x
call_split See protocol

[…] ted with 2.5 µM of calcein-AM. Fluorescence images were obtained every 20 minutes for a total of 100 minutes using a GFP filter. The resulting TIFF image files were analyzed using ImageJ software and interactive 3D surface plot plugging was used to obtain 3D graphs based on the pixel intensities of images. Each experiment was carried out in triplicate and the whole experiment was duplicated. […]


Spermine synthase deficiency causes lysosomal dysfunction and oxidative stress in models of Snyder Robinson syndrome

Nat Commun
PMCID: 5668419
PMID: 29097652
DOI: 10.1038/s41467-017-01289-7
call_split See protocol

[…] sing ImageJ software. Specifically, histogram plots in Fig.  and Supplementary Fig.  are analyzed using ImageJ Plot Profile and surface plots in Fig.  and Supplementary Fig.  are plotted using ImageJ Interactive 3D Surface Plot plugin. […]


Yeast silencing factor Sir4 and a subset of nucleoporins form a complex distinct from nuclear pore complexes

PMCID: 5626528
PMID: 28883038
DOI: 10.1083/jcb.201609049
call_split See protocol

[…] tacks through the nuclei of 50 different cells were isolated in a square region comprising 50 by 50 pixels. 3D pixel signal intensity maps of the selected squares were created using the ImageJ plugin Interactive 3D Surface Plot, and the luminescence intensities of these pixels were plotted as peaks. We visually determined the mean peak heights representing the pixel intensity emitted by the Nup-eG […]


Investigation of spinal nerve ligation mediated functional activation of the rat brain using manganese enhanced MRI

Exp Anim
PMCID: 5814311
PMID: 28747592
DOI: 10.1538/expanim.17-0033

[…] n ROI manager analysis tool was used for the value of the signal intensity of the image (Image J,, and the dispersion of the signal intensity of the ROI was analyzed using the interactive 3D surface plot v2.32 (spectrum LUT, grid size 128–512, lighting 0.27–0.8, max. 100%, min. 0%, Image J, […]


GTSE1: a novel TEAD4 E2F1 target gene involved in cell protrusions formation in triple negative breast cancer cell models

PMCID: 5620183
PMID: 28978043
DOI: 10.18632/oncotarget.18691

[…] The average number of cell protrusions/cell was obtained dividing the number of pseudopodia by the number of cell nuclei. A three-dimensional representation of cell protrusions was obtained using the Interactive 3D Surface Plot plugin ( for ImageJ. Data were obtained from three independent experiments. […]


Survival and Intra Nuclear Trafficking of Burkholderia pseudomallei: Strategies of Evasion from Immune Surveillance?

PLoS Negl Trop Dis
PMCID: 5234843
PMID: 28045926
DOI: 10.1371/journal.pntd.0005241
call_split See protocol

[…] to confirm the ensconcing B. pseudomallei within the nucleus. ImageJ was used to measure the fluorescence intensity pixels from select portions of the images and plotted as 3D graph (interactive 3D surface plot), which enables the intensity pixels to be viewed in XY, XZ and YZ dimensions. The fluorescence distribution of Alexa fluor 488-stained B. pseudomallei was seen as a green […]

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