Interactive 3D Surface Plot specifications

Information


Unique identifier OMICS_25535
Name Interactive 3D Surface Plot
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Programming languages Java
License GNU General Public License version 3.0
Computer skills Medium
Version 3.0.0
Stability Stable
Maintained Yes

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Interactive 3D Surface Plot in publications

 (28)
PMCID: 5772368
PMID: 29343829
DOI: 10.1038/s41598-018-19325-x

[…] with 2.5 µm of calcein-am. fluorescence images were obtained every 20 minutes for a total of 100 minutes using a gfp filter. the resulting tiff image files were analyzed using imagej software and interactive 3d surface plot plugging was used to obtain 3d graphs based on the pixel intensities of images. each experiment was carried out in triplicate and the whole experiment was duplicated., […]

PMCID: 5668419
PMID: 29097652
DOI: 10.1038/s41467-017-01289-7

[…] imagej software. specifically, histogram plots in fig.  and supplementary fig.  are analyzed using imagej plot profile and surface plots in fig.  and supplementary fig.  are plotted using imagej interactive 3d surface plot plugin., for immunoblot analysis of cathepsins, tissues were homogenized on ice in lysis buffer containing 20 mm hepes, 100 mm nacl, 1 mm cacl2, 0.5% triton x-100 […]

PMCID: 5626528
PMID: 28883038
DOI: 10.1083/jcb.201609049

[…] through the nuclei of 50 different cells were isolated in a square region comprising 50 by 50 pixels. 3d pixel signal intensity maps of the selected squares were created using the imagej plugin interactive 3d surface plot, and the luminescence intensities of these pixels were plotted as peaks. we visually determined the mean peak heights representing the pixel intensity emitted […]

PMCID: 5814311
PMID: 28747592
DOI: 10.1538/expanim.17-0033

[…] roi manager analysis tool was used for the value of the signal intensity of the image (image j, https://imagej.nih.gov), and the dispersion of the signal intensity of the roi was analyzed using the interactive 3d surface plot v2.32 (spectrum lut, grid size 128–512, lighting 0.27–0.8, max. 100%, min. 0%, image j, https://imagej.nih.gov)., all the results were presented as mean ± sd. the mean […]

PMCID: 5147837
PMID: 27935982
DOI: 10.1371/journal.pone.0167116

[…] of health (http://imagej.nih.gov/ij/) was used to analyze sem images of the highest magnification obtained in this study (x 5000). images were analyzed in the grey scale 8-bit mode. the plug-in interactive 3d surface plot was applied with optimization of display options using the exact parameters in all compared images. additionally, we installed surfacej plugin to imagej. surfacej was used […]


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