InteractiVenn protocols

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InteractiVenn statistics

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InteractiVenn specifications

Information


Unique identifier OMICS_08640
Name InteractiVenn
Interface Web user interface
Restrictions to use None
Programming languages Javascript
License GNU General Public License version 3.0
Computer skills Basic
Stability Stable
Maintained Yes

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Additional information


http://www.interactivenn.net/help.html

Publication for InteractiVenn

library_books

InteractiVenn: a web-based tool for the analysis of sets through Venn diagrams.

2015 BMC Bioinformatics
PMCID: 4455604
PMID: 25994840
DOI: 10.1186/s12859-015-0611-3

InteractiVenn in pipelines

 (3)
2017
PMCID: 5306128
PMID: 28261228
DOI: 10.3389/fpls.2017.00140

[…] snp data were converted to segregating sites, and phyml () was used to build the maximum likelihood tree with its default parameters. the venn diagram of snps and functionally lost genes was draw by interactivenn (). the annotation of variation was performed by snpeff (). to visualize the genomic variation data, circos () were used. for the density calculation of variants, sp and gc contents, […]

2016
PMCID: 5072713
PMID: 27764252
DOI: 10.1371/journal.pone.0165176

[…] codonw v1.4.4 (http://codonw.sourceforge.net). the circular gene maps were made with ogdraw (organellargenome draw - http://ogdraw.mpimp-golm.mpg.de/) []. comparative analysis was carried out with interactivenn (http://www.interactivenn.net/) [], and blast., the annotated sequence and the raw reads for the u. reniformis chloroplast genome have been deposited in the genbank database […]

2016
PMCID: 5153474
PMID: 28025641
DOI: 10.1155/2016/3290260

[…] hctl, we set a cut-off for fold change (>1.2) of protein abundance provided by mascot and p value (<0.05) calculated by edger []. venn diagram of up- and downregulated proteins was analyzed by interactivenn (http://www.interactivenn.net/) []. to annotate potential functions of proteins, uniprot ids of candidate proteins were submitted to david bioinformatics resources 6.7 […]


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InteractiVenn in publications

 (47)
PMCID: 5934943
PMID: 29755445
DOI: 10.3389/fmicb.2018.00833

[…] 0.05) using the conet app () in cytoscape v.3.0.2 ()., a venn diagram from site-stable bacterial populations (persistent otus found at each reef/sampling point) was obtained using the web-based tool interactivenn ()., sediment samples (∼0.3 mg) were dried (60°c) and ground, and the percentages of n, c, and carbonate were determined via costech ea-delta xp irms. seawater from each collection site […]

PMCID: 5925963
PMID: 29740265
DOI: 10.3389/fnins.2018.00220

[…] package was used for generating gene lists, and principle components analysis (pca) using the statistics software r (r development core team, 2008). the venn diagram was made using http://www.interactivenn.net. previous gene lists representing essential signaling ligands were used for further filtering parameters (azim et al., ). all imported datasets were quality checked on a pca plot […]

PMCID: 5843661
PMID: 29520099
DOI: 10.1038/s41598-018-22611-3

[…] number of the minimum unique peptides was set at one; experimental bias was corrected by normalization to the median in each sample. venn diagram of up- and down-regulated proteins was analyzed by interactivenn (http://www.interactivenn.net/)., go annotation proteome was derived from the uniprot-goa database (www. http://www.ebi.ac.uk/goa/). proteins were classified by go annotation based […]

PMCID: 5830407
PMID: 29507734
DOI: 10.1038/s41438-018-0020-7

[…] pathways were further investigated to elucidate the specific genes which are differentially regulated under these conditions., shared and unique de genes and enriched pathways were visualized with interactivenn (https://omictools.com/interactivenn-tool). candidate pathways and logfc results for genes within these pathways were visualized using cytoscape 3.4.0 (http://www.cytoscape.org/)., […]

PMCID: 5814461
PMID: 29449587
DOI: 10.1038/s41598-018-21468-w

[…] belong to jun-chen class of herbs. herein, we investigated the distribution of targets for these five distinct herbs (149 from sc, 146 from rs, 120 from sw, 146 from nz and 142 from gq,) using interactivenn., as fig.  shows, the five herbs cover 156 targets in total. interestingly, 116 out of them are common target proteins that exist in all of these five herbs simultaneously, indicating […]


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InteractiVenn institution(s)
Universidade de Sao Paulo, Instituto de Ciências Matematicas e de Computaçao, São Carlos, Brazil; Laboratório Nacional de Biociências, Campinas, Brazil; Embrapa Informática Agropecuária, Brasilia, Brazil; Universidade Estadual de Campinas, Brazil
InteractiVenn funding source(s)
Supported by the Fundação de Amparo à Pesquisa do Estado de São Paulo and of Conselho Nacional de Desenvolvimento Científico e Tecnológico.

InteractiVenn review

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floem7

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Web
Great tool. Draws diagram for up to six samples, allowing for text size edition, color choosing and opacity adjustment.
Diagram can be exported to svg/png/txt, also sets can be saved locally for later use.