IntEREst specifications

Information


Unique identifier OMICS_16731
Name IntEREst
Alternative name Intron Exon Retention Estimator
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Some RNA-seq data.
Input format BAM
Output data Some estimated intron-retention levels or the estimated exon junction levels.
Output format TXT
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.2.0
Stability Stable
Requirements GenomicRanges, Rsamtools, SummarizedExperiment, edgeR, S4Vectors, seqLogo, Biostrings, GenomicFeatures, IRanges, seqinr, limma, graphics, grDevices, stats, utils, grid, methods, DBI, RMySQL, GenomicAlignments, BiocParallel, BiocGenerics
Maintained Yes

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Documentation


Maintainer


  • person_outline Ali Oghabian <>

Additional information


https://bioconductor.org/packages/release/bioc/html/IntEREst.html
IntEREst institution(s)
Institute of Biotechnology, University of Helsinki, Helsinki, Finland

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