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InterEvDock specifications

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Unique identifier OMICS_11692
Name InterEvDock
Alternative name InterEvDock2
Interface Web user interface
Restrictions to use None
Input data Protein structures
Input format PDB
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Raphaël Guerois

Publications for InterEvDock

InterEvDock citations

 (3)
library_books

A novel Gerstmann Sträussler Scheinker disease mutation defines a precursor for amyloidogenic 8 kDa PrP fragments and reveals N terminal structural changes shared by other GSS alleles

2018
PLoS Pathog
PMCID: 5786331
PMID: 29338055
DOI: 10.1371/journal.ppat.1006826

[…] was done with vmd or accelrys vs []. protein docking and predictions of residues involved in oligomer contacts for representative snapshots from m128v and hrdup trajectories were made through the interevdock server integrated in the rpbs mobyle portal []., to analyze and compare dynamics of prp alleles in greater depth we employed the novel essential collective dynamics (ecd) method [, , –]. […]

library_books

Structural Analysis of Recombinant Human Preproinsulins by Structure Prediction, Molecular Dynamics, and Protein Protein Docking

2017
PMCID: 5769858
PMID: 29307140
DOI: 10.5808/GI.2017.15.4.142

[…] potential energy, total energy, and root-mean-square deviation of the atomic positions., protein-protein docking between trypsin (pdb id: 2ptn) and recombinant proinsulins was performed using the interevdock server []. the interevdock server provides three kinds of scores: interevdock, frodock [], and soap_pp []. we chose the soap_pp score to evaluate the binding affinities, and docked poses […]

library_books

Applications of contact predictions to structural biology

2017
PMCID: 5414403
PMID: 28512576
DOI: 10.1107/S2052252517005115

[…] scattering matter of the target and therefore, if sufficiently accurate, should exhibit improved signal to noise and hence a better chance of successful structure solution. a single docking server, interevdock, that automatically incorporates evolutionary covariance into its calculations has very recently become available (yu et al., 2016; see table 1). it carries out rigid-body docking of two […]


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InterEvDock institution(s)
Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Univ Paris-Sud, Université Paris-Saclay, Gif-sur-Yvette, France; INSERM UMR-S 973 Molécules Thérapeutiques in Silico, INSERM UMR-S 973, RPBS, Université Paris Diderot, Paris, France
InterEvDock funding source(s)
French Infrastructure for Integrated Structural Biology (FRISBI) [ANR-10-INSB-05-01]; ANR-IAB-2011-BIP:BIP [ANR-10-BINF-0003]; IFB [ANR-11-INBS-0013]

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