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InterEvDock specifications

Information


Unique identifier OMICS_11692
Name InterEvDock
Alternative name InterEvDock2
Interface Web user interface
Restrictions to use None
Input data Protein structures
Input format PDB
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Raphaël Guerois

Publications for InterEvDock

InterEvDock citations

 (3)
library_books

A novel Gerstmann Sträussler Scheinker disease mutation defines a precursor for amyloidogenic 8 kDa PrP fragments and reveals N terminal structural changes shared by other GSS alleles

2018
PLoS Pathog
PMCID: 5786331
PMID: 29338055
DOI: 10.1371/journal.ppat.1006826

[…] els was done with VMD or Accelrys VS []. Protein docking and predictions of residues involved in oligomer contacts for representative snapshots from M128V and HRdup trajectories were made through the InterEVDock server integrated in the RPBS Mobyle portal []. […]

library_books

Structural Analysis of Recombinant Human Preproinsulins by Structure Prediction, Molecular Dynamics, and Protein Protein Docking

2017
PMCID: 5769858
PMID: 29307140
DOI: 10.5808/GI.2017.15.4.142

[…] Protein-protein docking between trypsin (PDB ID: 2PTN) and recombinant proinsulins was performed using the InterEvDock server []. The InterEvDock server provides three kinds of scores: InterEvDock, FRODOCK [], and SOAP_PP []. We chose the SOAP_PP score to evaluate the binding affinities, and docked poses w […]

library_books

Applications of contact predictions to structural biology

2017
PMCID: 5414403
PMID: 28512576
DOI: 10.1107/S2052252517005115

[…] e scattering matter of the target and therefore, if sufficiently accurate, should exhibit improved signal to noise and hence a better chance of successful structure solution. A single docking server, InterEvDock, that automatically incorporates evolutionary covariance into its calculations has very recently become available (Yu et al., 2016; see Table 1). It carries out rigid-body docking of two s […]

Citations

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InterEvDock institution(s)
Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Univ Paris-Sud, Université Paris-Saclay, Gif-sur-Yvette, France; INSERM UMR-S 973 Molécules Thérapeutiques in Silico, INSERM UMR-S 973, RPBS, Université Paris Diderot, Paris, France
InterEvDock funding source(s)
French Infrastructure for Integrated Structural Biology (FRISBI) [ANR-10-INSB-05-01]; ANR-IAB-2011-BIP:BIP [ANR-10-BINF-0003]; IFB [ANR-11-INBS-0013]

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