A server for protein docking based on a free rigid-body docking strategy. It relies on the integration of various components for decoy generation and scoring. Particularly, the combination of the SOAP-PP, FRODOCK and InterEvScore makes it very efficient for the identification of complex conformations not undergoing large conformational changes. The server has many advantages: a user-specific workspace for easy job management, fast evaluation of several tens of thousands of models, high success rates of the consensus method and a user-friendly graphical interface. In 91% of all complexes tested in the benchmark, at least one residue out of the 10 predicted is involved in the interface, providing useful guidelines for mutagenesis. InterEvDock is able to identify a correct model among the top10 models for 49% of the rigid-body cases with evolutionary information, making it a unique and efficient tool to explore structural interactomes under an evolutionary perspective.
Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Univ Paris-Sud, Université Paris-Saclay, Gif-sur-Yvette, France; INSERM UMR-S 973 Molécules Thérapeutiques in Silico, INSERM UMR-S 973, RPBS, Université Paris Diderot, Paris, France
InterEvDock funding source(s)
French Infrastructure for Integrated Structural Biology (FRISBI) [ANR-10-INSB-05-01]; ANR-IAB-2011-BIP:BIP [ANR-10-BINF-0003]; IFB [ANR-11-INBS-0013]