InterEvScore statistics

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Citations per year

Number of citations per year for the bioinformatics software tool InterEvScore
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Tool usage distribution map

This map represents all the scientific publications referring to InterEvScore per scientific context
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InterEvScore specifications

Information


Unique identifier OMICS_17305
Name InterEvScore
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Raphaël Guerois

Publication for InterEvScore

InterEvScore citations

 (4)
library_books

A novel Gerstmann Sträussler Scheinker disease mutation defines a precursor for amyloidogenic 8 kDa PrP fragments and reveals N terminal structural changes shared by other GSS alleles

2018
PLoS Pathog
PMCID: 5786331
PMID: 29338055
DOI: 10.1371/journal.ppat.1006826

[…] lates for protein docking on the InterEVDock server integrated in the RPBS Mobyle portal []. 10,000 decoys were created, scored and clustered resulting in 10 models for each of three scoring methods (InterEVScore, SOAP_PP atom-based statistical potential, and FRODOCK). Conservation of residues was assessed with the rate4site. […]

library_books

HawkRank: a new scoring function for protein–protein docking based on weighted energy terms

2017
J Cheminform
PMCID: 5745212
PMID: 29282565
DOI: 10.1186/s13321-017-0254-7

[…] accurately. So far a large number of scoring functions have been developed, ranging from force field-based scoring functions such as ZRANK and FireDock [–], to knowledge-based ones such as dDFIRE and InterEvScore [–] and machine-learning scoring functions [, ]. However, recognizing near-native structures from a huge pool of alternatives is still quite challenging because the accuracy of most scori […]

library_books

Co evolution techniques are reshaping the way we do structural bioinformatics

2017
F1000Res
PMCID: 5531156
PMID: 28781768
DOI: 10.12688/f1000research.11543.1

[…] evolution has also been shown to assist in protein–protein docking during the rounds 28–35 of the critical assessment of prediction of interactions. A potential based on co-evolution inference called InterEVScore was used in conjunction with ZDock, SOAP-PP, and Rosetta refinement to produce correct predictions for 10 out of 18 targets , . Co-evolution has also been used to identify protein–protein […]

library_books

Molecular determinants of the DprA−RecA interaction for nucleation on ssDNA

2014
Nucleic Acids Res
PMCID: 4066776
PMID: 24782530
DOI: 10.1093/nar/gku349

[…] we could then control the reliability of the blind docking procedure in its ability to retrieve plausible solutions. The 54 000 decoys generated by ZDOCK were re-scored and re-ranked using ZRANK and InterEvScore. The solutions were clustered for each scoring function on the basis of their mutual ligand rmsd, and only then we considered which models among the obtained solutions satisfied the const […]


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InterEvScore institution(s)
CEA, iBiTecS, Service de Bioenergetique Biologie Structurale et Mecanismes (SB2SM), Laboratoire de Biologie Structurale et Radiobiologie (LBSR), Gif sur Yvette, France; CNRS, UMR 8221, Gif sur Yvette, France; Université Paris Sud, UMR 8221, Orsay, France
InterEvScore funding source(s)
This work was supported by CEA, the ANR-SVSE3-2010-DYNAMOPHAGE, the ANR-IAB-2011-BIP:BIP and the French Infrastructure for Integrated Structural Biology (FRISBI) ANR-10-INSB-05-01 grants.

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