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Internal symmetry detection software tools | Protein structure data analysis

Internal symmetry of a protein structure is the pseudo-symmetry that a single protein chain sometimes exhibits. This is in contrast to the symmetry with which monomers are arranged in many multimeric protein complexes.Source text:(Tai et al., 2014)…
Swelfe
Web

Swelfe

Finds internal repeats at three levels. Swelfe identifies repeats by alignment…

Finds internal repeats at three levels. Swelfe identifies repeats by alignment of DNA sequences, amino acids sequences and three dimensional (3D) structures. Preliminarily, 3D structures are encoded…

GANGSTA+
Web

GANGSTA+

A combinatorial algorithm for non-sequential structural alignment of proteins…

A combinatorial algorithm for non-sequential structural alignment of proteins and similarity search in databases. Since GANGSTA+ ignores the polypeptide chain connectivity of SSEs (secondary…

SymD
Desktop
Web

SymD

A program that detects proteins with internal symmetry. SymD proved to be…

A program that detects proteins with internal symmetry. SymD proved to be useful for analyzing protein structure, function and modeling. This web-based interactive tool was developed by implementing…

CE-symm
Desktop
Web

CE-symm

Detects pseudo-symmetry within the tertiary structure of protein chains. Using…

Detects pseudo-symmetry within the tertiary structure of protein chains. Using a large manually curated benchmark of 1007 protein domains, we show that CE-Symm performs significantly better than…

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