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International HapMap Project specifications

Information


Unique identifier OMICS_00273
Name International HapMap Project
Restrictions to use None
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Publications for International HapMap Project

International HapMap Project citations

 (331)
library_books

Association of Optic Neuritis with CYP4F2 Gene Single Nucleotide Polymorphism and IL 17A Concentration

2018
PMCID: 5874979
PMID: 29736281
DOI: 10.1155/2018/1686297

[…] SNPs for the human CYP4F2 gene listed in the National Center for Biotechnology Information SNP database Build 126 (http://www.ncbi.nlm.nih.gov/SNP). Authors screened the data for the Tag SNPs on the International HapMap Project website (http://www.hapmap.org/index.html.ja), using a cutoff level of r2 ≥ 0.5, and for the minor allele frequency, we used a cutoff level of ≥0.1. According to the above […]

library_books

S100B polymorphisms are associated with age of onset of Parkinson’s disease

2018
BMC Med Genet
PMCID: 5848451
PMID: 29529989
DOI: 10.1186/s12881-018-0547-3

[…] DNA from blood samples were genotyped using the KASPar® PCR SNP genotyping system (KBiosciences, Herts, UK). The three tag-SNPs were chosen by pair wise tagging (r2 ≥ 0.80) from the International HapMap Project database (release 27, Phase II + III, February 2009, on NCBI B36 assembly, dbSNP b126). Thirty-eight individuals in the discovery cohort and four individuals in the valida […]

library_books

Association between apolipoprotein B genetic polymorphism and the risk of calcific aortic stenosis in Chinese subjects, in Xinjiang, China

2018
PMCID: 5842539
PMID: 29514644
DOI: 10.1186/s12944-018-0696-6

[…] c association. There are 5453 SNPs for the human apoB gene listed in the National Center for Biotechnology Information SNP database (http://www.ncbi.nlm.nih.gov/SNP). Using Haploview 4.2 software and International HapMap Project website phase I&II data base (http://www.hapmap.org), we obtained two tagging SNPs (rs6725189,rs693) using minor allele frequency (MAF) ≥0.05 and linkage disequilibrium pa […]

call_split

Polymorphisms in Toll Like Receptor 10 and Tuberculosis Susceptibility: Evidence from Three Independent Series

2018
Front Immunol
PMCID: 5829065
PMID: 29527210
DOI: 10.3389/fimmu.2018.00309
call_split See protocol

[…] Single-nucleotide polymorphisms located within the region 3,000 base pairs upstream and 300 base pairs downstream of TLR10 in Chinese Han in Beijing were obtained from the International HapMap Project (accessed on May 1, 2016). We used Haploview 4.2 (Broad Institute of MIT and Harvard, Boston, MA, USA) to capture tagSNPs using common genetic variation [minor allele freq […]

library_books

Validation of genotype imputation in Southeast Asian populations and the effect of single nucleotide polymorphism annotation on imputation outcome

2018
BMC Med Genet
PMCID: 5812212
PMID: 29439659
DOI: 10.1186/s12881-018-0534-8

[…] ences used for the imputation were downloaded prior to the imputation process from the Impute website (http://mathgen.stats.ox.ac.uk/impute/impute.html). The references were labeled on the website as International HapMap project phase II release #22 (HMII) and 1000G phase I. A total of 1,417,081 SNPs from 90 Chinese and Japanese samples were used from HMII with an additional 39,343,900 SNPs from 1 […]

call_split

Regional evaluation of childhood acute lymphoblastic leukemia genetic susceptibility loci among Japanese

2018
Sci Rep
PMCID: 5768812
PMID: 29335448
DOI: 10.1038/s41598-017-19127-7
call_split See protocol

[…] analysis (PCA) based on a genome-wide subset of SNPs in low LD (pruned at r2 < 0.1) that passed quality control steps was performed on a known ethnically homogeneous population of Japanese ancestry (International HapMap Project) together with cases and controls. The PCA was conducted using the EIGENSTRAT 2.0 software package and outlier samples were excluded (2 cases and 5 controls). In result, a […]

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International HapMap Project institution(s)
Broad Institute, Cambridge, MA, USA

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