InteroPORC statistics

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Citations per year

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Associated diseases

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InteroPORC specifications

Information


Unique identifier OMICS_02918
Name InteroPORC
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Taxon


  • Bacteria
    • Escherichia coli
    • Helicobacter pylori
  • Invertebrates
    • Drosophila melanogaster
  • Plants and Fungi
    • Arabidopsis thaliana
  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus
    • Rattus norvegicus

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Information


Unique identifier OMICS_02918
Name InteroPORC
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Bacteria
    • Escherichia coli
    • Helicobacter pylori
  • Invertebrates
    • Drosophila melanogaster
  • Plants and Fungi
    • Arabidopsis thaliana
  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus
    • Rattus norvegicus

Publication for InteroPORC

InteroPORC in publications

 (13)
PMCID: 5919440
PMID: 29698482
DOI: 10.1371/journal.pone.0195545

[…] interactions would be expected to be more reliable., in this subsection, we validated the predictive performance of greedyminppi with three unweighted ppi prediction methods, pipe [], spps [] and interoporc []. pipe predicts ppis only using information derived from the primary sequence of s. cerevisiae which consists of 6304 protein sequences. spps server is developed by combining support […]

PMCID: 4960257
PMID: 27507973
DOI: 10.3389/fpls.2016.01034

[…] and identified by comparing their retention times and mass spectra with those in the nist or wiley library., protein-protein interactions (ppi) were searched against genemannia, bar, string, mentha, interoporc, intact, dip, apid, mint, and bind ppi databases and the in silico generated patho-stress responsive protein network was visualized with cytoscape version 3.0.2 (shannon et al., ). a list […]

PMCID: 5217357
PMID: 28248230
DOI: 10.3390/proteomes4030020

[…] having a score higher than 40 the peptide sequence was systematically checked manually ()., protein-protein interactions (ppi) were searched against genemannia [], bar [], string [], menthe [], interoporc [], intact [], dip [], apid [], mint [], and bind [] ppi databases and the in silico generated protein and phosphoprotein network was visualized with cytoscape [] version 3.0.2 []., […]

PMCID: 4858940
PMID: 26889046
DOI: 10.1074/mcp.M115.053603

[…] intact (584 records), the agile protein interaction dataanalyzer (apid) (524 records), the database of interacting proteins (dip) (456 records), the automatic molecular interaction predictions interoporc (132 records), bindingdb (25 records), european bioinformatics institute (ebi)-go annotation (goa)-intact (13 records), the molecular interaction (mint) (eight records), the chemical […]

PMCID: 4614683
PMID: 26490033
DOI: 10.1038/srep15519

[…] into protein properties in biological systems. such studies were also undertaken in synechocystis sp. strain pcc 6803, such as synechonet database that integrated ppis by domain information and interoporc database that inferred highly conserved ppis. however, the data from single source are bias in predicting ppis, thus it is critical to integrate data computationally from multiple sources […]


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InteroPORC institution(s)
CEA, IBITECS, Gif sur Yvette, France

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