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InteroPORC specifications

Information


Unique identifier OMICS_02918
Name InteroPORC
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Taxon


  • Bacteria
    • Escherichia coli
    • Helicobacter pylori
  • Invertebrates
    • Drosophila melanogaster
  • Plants and Fungi
    • Arabidopsis thaliana
  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus
    • Rattus norvegicus

Versioning


No version available

Information


Unique identifier OMICS_02918
Name InteroPORC
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Bacteria
    • Escherichia coli
    • Helicobacter pylori
  • Invertebrates
    • Drosophila melanogaster
  • Plants and Fungi
    • Arabidopsis thaliana
  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus
    • Rattus norvegicus

Publication for InteroPORC

InteroPORC citations

 (13)
library_books

Determining the minimum number of protein protein interactions required to support known protein complexes

2018
PMCID: 5919440
PMID: 29698482
DOI: 10.1371/journal.pone.0195545

[…] interactions would be expected to be more reliable., in this subsection, we validated the predictive performance of greedyminppi with three unweighted ppi prediction methods, pipe [], spps [] and interoporc []. pipe predicts ppis only using information derived from the primary sequence of s. cerevisiae which consists of 6304 protein sequences. spps server is developed by combining support […]

library_books

Proteometabolomic Study of Compatible Interaction in Tomato Fruit Challenged with Sclerotinia rolfsii Illustrates Novel Protein Network during Disease Progression

2016
PMCID: 4960257
PMID: 27507973
DOI: 10.3389/fpls.2016.01034

[…] and identified by comparing their retention times and mass spectra with those in the nist or wiley library., protein-protein interactions (ppi) were searched against genemannia, bar, string, mentha, interoporc, intact, dip, apid, mint, and bind ppi databases and the in silico generated patho-stress responsive protein network was visualized with cytoscape version 3.0.2 (shannon et al., ). a list […]

library_books

Extracellular Matrix Proteome and Phosphoproteome of Potato Reveals Functionally Distinct and Diverse Canonical and Non Canonical Proteoforms

2016
PMCID: 5217357
PMID: 28248230
DOI: 10.3390/proteomes4030020

[…] having a score higher than 40 the peptide sequence was systematically checked manually ()., protein-protein interactions (ppi) were searched against genemannia [], bar [], string [], menthe [], interoporc [], intact [], dip [], apid [], mint [], and bind [] ppi databases and the in silico generated protein and phosphoprotein network was visualized with cytoscape [] version 3.0.2 []., […]

library_books

Quantitative Proteomics Analysis Reveals the Min System of Escherichia coli Modulates Reversible Protein Association with the Inner Membrane*

2016
PMCID: 4858940
PMID: 26889046
DOI: 10.1074/mcp.M115.053603

[…] intact (584 records), the agile protein interaction dataanalyzer (apid) (524 records), the database of interacting proteins (dip) (456 records), the automatic molecular interaction predictions interoporc (132 records), bindingdb (25 records), european bioinformatics institute (ebi)-go annotation (goa)-intact (13 records), the molecular interaction (mint) (eight records), the chemical […]

library_books

Genome wide protein protein interactions and protein function exploration in cyanobacteria

2015
PMCID: 4614683
PMID: 26490033
DOI: 10.1038/srep15519

[…] into protein properties in biological systems. such studies were also undertaken in synechocystis sp. strain pcc 6803, such as synechonet database that integrated ppis by domain information and interoporc database that inferred highly conserved ppis. however, the data from single source are bias in predicting ppis, thus it is critical to integrate data computationally from multiple sources […]

library_books

Prediction of host pathogen protein interactions between Mycobacterium tuberculosis and Homo sapiens using sequence motifs

2015
PMCID: 4456996
PMID: 25887594
DOI: 10.1186/s12859-015-0535-y

[…] from m. tuberculosis and 48 proteins from homo sapiens. intra-species ppis were further predicted for the proteins from m. tuberculosis and proteins from homo sapiens using visant [], reactome [], interoporc [], intact [], dip [], mpidb [], mint [], and hprd []. a biological interaction network between m. tuberculosis and homo sapiens was then constructed by the predicted inter- […]


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InteroPORC institution(s)
CEA, IBITECS, Gif sur Yvette, France

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