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Interpretation software tools | CLIP-seq data analysis

The last step of CLIP-seq analysis involves functional characterization of the target RNAs identified to provide clues about the molecular function of the RBP(s) or the miRNA(s) of interest.

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Seten
Desktop
Web

Seten

Identifies and compares processes, phenotypes and diseases associated with…

Identifies and compares processes, phenotypes and diseases associated with RNA-binding proteins (RBPs) from condition-specific CLIP-seq profiles. Seten facilitates comparative analysis by using an…

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ChIP-Enrich
Desktop
Web

ChIP-Enrich

Tests ChIP-seq peak data for enrichment of biological pathways, Gene Ontology…

Tests ChIP-seq peak data for enrichment of biological pathways, Gene Ontology terms, and other types of gene sets. Using an input .BED file, ChIP-Enrich assigns peaks to genes based on a chosen…

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MetaPlotR
Desktop

MetaPlotR

Creates metagene plots. MetaPlotR generates metagene plots of nucleotide…

Creates metagene plots. MetaPlotR generates metagene plots of nucleotide modifications, protein binding sites or any other transcriptomic sites. It works for any organism for which a genome and…

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