Interpro2GO pipeline

Interpro2GO specifications

Information


Unique identifier OMICS_14665
Name Interpro2GO
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


Add your version

Maintainer


  • person_outline Robert Finn <>

Publication for Interpro2GO

Interpro2GO IN pipeline

2016
PMCID: 5156904
PMID: 27976685
DOI: 10.1038/srep38923

[…] the alignments resulting from diamond79 against an ncbi-nr database (feb/2016). the read counts were normalized to the smallest number of reads78. functional profiling was investigated using the interpro2go database80, resulting matrixes were exported using stamp format for the statistical analysis as described above., the correlations between the most abundant microbial functions (i.e., […]

Interpro2GO institution(s)
European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, UK; Faculty of Life Science and School of Computer Science, The University of Manchester, Manchester, UK; Swiss Institute of Bioinformatics (SIB), CMU, Geneva, Switzerland; Center for Integrative Genomics, University of Lausanne, Lausanne, Switzerland; Department of Biochemistry, University of Geneva, Geneva, Switzerland; Pôle Rhone-Alpin de Bio-Informatique (PRABI), Universite Claude Bernard, Villeurbanne, France; European Molecular Laboratory (EMBL), Heidelberg, Germany; Department of Computer Science, University of Bristol, Bristol, UK; J. Craig Venter Institute (JCVI), Chinakville, MD, USA; Protein Information Resource (PIR), Georgetown University Medical Center, WA, DC, USA; Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, USA; Structural and Molecular Biology Department, University College London, University of London, London, UK; Division of Bioinformatics, Department of Preventive Medicine, University of Southern California, Los Angeles, CA, USA
Interpro2GO funding source(s)
Supported by Biotechnology and Biological Sciences Research Council (BBSRC) [BB/L024136/1]; European Molecular Biology Laboratory (EMBL) core funds.

Interpro2GO reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Interpro2GO