Interpro2GO statistics

Tool stats & trends

Looking to identify usage trends or leading experts?


Interpro2GO specifications


Unique identifier OMICS_14665
Name Interpro2GO
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


No version available


  • person_outline Robert Finn

Publication for Interpro2GO

Interpro2GO citations


An Updated Functional Annotation of Protein Coding Genes in the Cucumber Genome

Front Plant Sci
PMCID: 5863696
PMID: 29599790
DOI: 10.3389/fpls.2018.00325

[…] el” species or in newly sequenced genomes rely on homology transfer based on sequence similarity, including Blast2GO (Conesa et al., ), identification of conserved domains (Rentzsch and Orengo, ) and InterPro2GO (Burge et al., ). In addition, OrthoMCL (Li et al., ) has been used to identify orthologous relationships between several related genomes using the Bidirectional Best Hits (BBH) strategy a […]


Disseminating Metaproteomic Informatics Capabilities and Knowledge Using the Galaxy P Framework

PMCID: 5874766
PMID: 29385081
DOI: 10.3390/proteomes6010007

[…] onal annotations from these databases to experimentally identified proteins are often database-specific, such as the eggNOG-mapper [] and InterProScan []. In addition, MEGAN6 can be used to carry out InterPro2GO, KEGG, SEED and EggNOG analysis to determine the distribution of functions amongst expressed proteins in the microbiome []. Beyond mapping functional annotations to identified proteins, vi […]


Genome assembly of the Pink Ipê (Handroanthus impetiginosus, Bignoniaceae), a highly valued, ecologically keystone Neotropical timber forest tree

PMCID: 5905499
PMID: 29253216
DOI: 10.1093/gigascience/gix125

[…] sis using InterProScan 5 (InterProScan, RRID:SCR_005829) [] for PFAM domains, PANTHER, Enzyme Comissioned Number (EC), and KEGG categories. Gene ontology annotation was obtained, where possible, from Interpro2GO and EC2GO mappings. […]


Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium

Genome Biol Evol
PMCID: 5739047
PMID: 29220487
DOI: 10.1093/gbe/evx255

[…] mappings between those method results and GO terms as provided by Uniprot-GOA for electronic annotation methods (, last accessed December 7, 2017): InterPro2GO, HAMAP2GO, EC2GO, UniprotKeyword2GO, UniprotSubcellular_Location2GO. The annotation data set was limited to the electronically inferred data to avoid biases in the annotation of certain mo […]


Development of an Efficient Protein Extraction Method Compatible with LC MS/MS for Proteome Mapping in Two Australian Seagrasses Zostera muelleri and Posidonia australis

Front Plant Sci
PMCID: 5559503
PMID: 28861098
DOI: 10.3389/fpls.2017.01416

[…] as calculated using the ExPASy tool ( The identified proteins were further annotated using InterproScan (Finn et al., ). The Gene Ontology terms were inferred using Interpro2GO (Gene Ontology Consortium, ). Subcellular localization of the proteins was assigned using Plant-mLoc ( and manually translated to Gene Onto […]


Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant parasitic nematodes

PLoS Genet
PMCID: 5465968
PMID: 28594822
DOI: 10.1371/journal.pgen.1006777

[…] thresholds and parameters. A gene ontology annotation was inferred from the Pfam protein domain annotation using the pfam2go mapping file maintained at the gene ontology portal and generated from the InterPro2GO mapping []. Gene ontology terms were also mapped on the generic GO-slim ontology using the GOSlimViewer utility developed as part of AgBase []. […]


Looking to check out a full list of citations?

Interpro2GO institution(s)
European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, UK; Faculty of Life Science and School of Computer Science, The University of Manchester, Manchester, UK; Swiss Institute of Bioinformatics (SIB), CMU, Geneva, Switzerland; Center for Integrative Genomics, University of Lausanne, Lausanne, Switzerland; Department of Biochemistry, University of Geneva, Geneva, Switzerland; Pôle Rhone-Alpin de Bio-Informatique (PRABI), Universite Claude Bernard, Villeurbanne, France; European Molecular Laboratory (EMBL), Heidelberg, Germany; Department of Computer Science, University of Bristol, Bristol, UK; J. Craig Venter Institute (JCVI), Chinakville, MD, USA; Protein Information Resource (PIR), Georgetown University Medical Center, WA, DC, USA; Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, USA; Structural and Molecular Biology Department, University College London, University of London, London, UK; Division of Bioinformatics, Department of Preventive Medicine, University of Southern California, Los Angeles, CA, USA
Interpro2GO funding source(s)
Supported by Biotechnology and Biological Sciences Research Council (BBSRC) [BB/L024136/1]; European Molecular Biology Laboratory (EMBL) core funds.

Interpro2GO reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Interpro2GO