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InterProScan | Protein domains identifier

Scans sequences against InterPro's signatures. InterProScan allows users to characterize a nucleotide or protein function by matching it with models from several different databases and to obtain a better overview of their results. The software performs relatively small numbers of sequences in a single analysis, including the ability to parallelize search jobs to minimize wall-clock time.

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InterProScan classification

InterProScan specifications

Unique identifier:
OMICS_01479
Software type:
Package/Module
Restrictions to use:
None
Input format:
FASTA
Output format:
TSV,XML,JSON,GFF,HTML,SVG
Programming languages:
C++, Java, Perl, Shell (Bash)
Computer skills:
Advanced
Stability:
Stable
Alternative names:
InterProScan 2, InterProScan 3, InterProScan 4, InterProScan 5
Interface:
Command line interface
Input data:
A file containing unaligned sequences.
Output data:
Results for protein and nucleotide sequences.
Operating system:
Unix/Linux
License:
Apache License version 2.0
Version:
5.26-65.0
Maintained:
Yes

InterProScan distribution

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InterProScan classification

InterProScan specifications

Unique identifier:
OMICS_01479
Interface:
Web user interface, Application programming interface
Input data:
A protein sequence.
Computer skills:
Basic
Maintained:
No
Alternative names:
InterProScan 2, InterProScan 3, InterProScan 4, InterProScan 5
Restrictions to use:
None
Input format:
FASTA
Stability:
Stable

InterProScan support

Documentation

Maintainers

  • Alex Mitchell <>
  • Team InterProScan <>
This tool is not maintained anymore.

Additional information

https://github.com/ebi-pf-team/interproscan/wiki http://www.ebi.ac.uk/interpro/training.html http://www.ebi.ac.uk/interpro/search/sequence-search

Credits

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Publications

Institution(s)

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton and Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK

Funding source(s)

Supported by Biotechnology and Biological Sciences Research Council (Bioinformatics and Biological Resources Fund) (BB/ F010508/1); European Union (under the program ‘FP7 capacities: Scientific Data Repositories’) (213037).

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