Intervene specifications

Information


Unique identifier OMICS_16307
Name Intervene
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Requires genomic regions or lists of genes/names as input.
Input format BED, GFF, GTF
Output data Outputs publication quality figures, intersection matrices, and R scripts to further enable and facilitate plot customization.
Output format R
Operating system Unix/Linux
Programming languages Python, R
Computer skills Advanced
Stability Stable
Requirements Bedtools, pybedtools, Pandas, R::UpSetR, corrplot
Maintained Yes

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Intervene article

Intervene institution(s)
Centre for Molecular Medicine Norway (NCMM), Nordic EMBL Partnership, University of Oslo, Oslo, Norway; Department of Cancer Genetics, Institute for Cancer Research, Oslo University Hospital Radiumhospitalet, Oslo, Norway
Intervene funding source(s)
This work has been supported by the Norwegian Research Council, Helse Sør-Øst, and the University of Oslo through the Centre for Molecular Medicine Norway (NCMM), which is part of the Nordic European Molecular Biology Laboratory partnership for Molecular Medicine.

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