Intervene specifications

Unique identifier:
OMICS_16307
Interface:
Command line interface
Input data:
Requires genomic regions or lists of genes/names as input.
Output data:
Outputs publication quality figures, intersection matrices, and R scripts to further enable and facilitate plot customization.
Operating system:
Unix/Linux
Computer skills:
Advanced
Requirements:
Bedtools, pybedtools, Pandas, R::UpSetR, corrplot
Software type:
Package/Module
Restrictions to use:
None
Input format:
BED, GFF, GTF
Output format:
R
Programming languages:
Python, R
Stability:
Stable
Maintained:
Yes

versioning

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Intervene distribution

download

Intervene support

Maintainer

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Credits

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Publications

Institution(s)

Centre for Molecular Medicine Norway (NCMM), Nordic EMBL Partnership, University of Oslo, Oslo, Norway; Department of Cancer Genetics, Institute for Cancer Research, Oslo University Hospital Radiumhospitalet, Oslo, Norway

Funding source(s)

This work has been supported by the Norwegian Research Council, Helse Sør-Øst, and the University of Oslo through the Centre for Molecular Medicine Norway (NCMM), which is part of the Nordic European Molecular Biology Laboratory partnership for Molecular Medicine.

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