IntPath protocols

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Associated diseases

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IntPath specifications

Information


Unique identifier OMICS_02707
Name IntPath
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained No

Taxon


  • Bacteria
    • Mycobacterium tuberculosis
  • Plants and Fungi
    • Saccharomyces cerevisiae
  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus

Publication for IntPath

IntPath in pipeline

2014
PMCID: 4022245
PMID: 24708540
DOI: 10.1186/1745-6150-9-5

[…] sapiens–m. tuberculosis h37rv ppin. hum-hum: in h. sapiens intra-species ppin. mtb-mtb: in m. tuberculosis intra-species ppin., the software packages and database tools used in this study are: , • intpath [], • bbh-ls [], • cytoscape [], • hmmer-v3.0 [], • david [], the datasets used in this study are: , • m. tuberculosis h37rv ppi dataset consisting of four reliable subsets of the b2h ppi […]


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IntPath in publications

 (8)
PMCID: 4682423
PMID: 26681650
DOI: 10.1186/1471-2164-16-S12-S4

[…] a protein-protein interaction is reconstructed if its two proteins have an edge in the reliable network., the data of biopathways in s. cerevisiae is downloaded from the public repository intpath []. this dataset integrates pathway data from several major public databases such as kegg, wikipathways, biocyc and so on. this data and tcgxcc datasets have 3,436 genes in common. we assume […]

PMCID: 4609065
PMID: 26475168
DOI: 10.1186/s12885-015-1721-z

[…] snps., as mentioned above, many studies suggest that the egfr and anxa3 genes have relevance to fluoropyrimidine resistance and their polymorphisms have links with biological functions. because the intpath database is currently the most powerful tool and also the most comprehensive integrated pathway database, we first conducted pathway analysis using the intpath database [] to draw the genetic […]

PMCID: 4535907
PMID: 26270051
DOI: 10.1371/journal.pone.0135208

[…] post-phagocytosis in cultured human macrophages [] and in lungs of mice infected with mtb []., to understand the functional relevance of mycobacterial genes expressed during infection, we used intpath database [] for pathway enrichment analysis and the enriched (over-represented) functional categories that are closely related to both pathogen growth and infection were compared. […]

PMCID: 4289233
PMID: 25411051
DOI: 10.1186/1471-2105-15-331

[…] including some missed by the major existing approaches., to further verify the biological relevance of the gene pair relationships detected by ra, we used gene pair relationships annotated in the intpath database (sapiensintpathgenepairs, downloaded 16th of may 2014) []. again, ra produced a higher enrichment in intpath-gene pair relationships among top-ranked genes compared to pe and mi […]

PMCID: 4154757
PMID: 25188299
DOI: 10.1371/journal.pone.0106801

[…] (part) , have been used for gene selection; fuzzy neural network (fnn) , and boosted fuzzy classifier with a sweep operator (bfcs) – have been used for the construction of prediction models; and intpath and stringent ddi-based prediction were used for analysis of pathways and protein–protein interactions. the use of statistical or bioinformatic analysis is practical and useful for clinical […]


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IntPath institution(s)
NUS Graduate School for Integrative Sciences and Engineering, National University of Singapore, Singapore

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