IntEREst specifications

Unique identifier:
OMICS_16731
Software type:
Package/Module
Restrictions to use:
None
Input format:
BAM
Output format:
TXT
Programming languages:
R
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
Name:
Intron Exon Retention Estimator
Interface:
Command line interface
Input data:
Some RNA-seq data.
Output data:
Some estimated intron-retention levels or the estimated exon junction levels.
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 2.0
Version:
1.2.0
Requirements:
GenomicRanges, Rsamtools, SummarizedExperiment, edgeR, S4Vectors, seqLogo, Biostrings, GenomicFeatures, IRanges, seqinr, limma, graphics, grDevices, stats, utils, grid, methods, DBI, RMySQL, GenomicAlignments, BiocParallel, BiocGenerics

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IntEREst distribution

download

IntEREst support

Documentation

Maintainer

  • Ali Oghabian <>

Additional information

https://bioconductor.org/packages/release/bioc/html/IntEREst.html

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Credits

Institution(s)

Institute of Biotechnology, University of Helsinki, Helsinki, Finland

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