InVEx specifications

Information


Unique identifier OMICS_00151
Name InVEx
Alternative name Introns Vs Exons
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A reference genome file.
Input format FASTA
Operating system Unix/Linux, Mac OS
Programming languages Python
Computer skills Advanced
Stability Stable
Requirements NumPy, SciPy, Cython, PyFasta
Maintained Yes

Versioning


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Maintainer


  • person_outline Lynda Chin <>

InVEx article

InVEx institution(s)
The Broad Institute of Harvard and MIT, Cambridge, MA, USA; Harvard Medical School, Boston, MA, USA; Department of Genomic Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX, USA; Department of Biochemistry and Molecular Biology and Center for Biomolecular Structure and Function, The University of Texas MD Anderson Cancer Center, Houston, TX, USA; Department of Systems Biology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA; Department of Melanoma Medical Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA; Department of Surgical Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA; Department of Cancer Biology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA; Institute for Applied Cancer Science, The University of Texas MD Anderson Cancer Center, Houston, TX, USA; Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA; Center for Cancer Genome Discovery, Dana-Farber Cancer Institute, Boston, MA, USA; Division of Genetics, Brigham and Women’s Hospital, Boston, MA, USA; Department of Surgery, Massachusetts General Hospital, Boston, MA, USA; Department of Molecular Oncology, John Wayne Cancer Institute, Santa Monica, CA, USA; Melanoma Department, John Wayne Cancer Institute, Santa Monica, CA, USA; Division of Immunology, Allergy and Infectious Diseases, Department of Dermatology, Medical University of Vienna and CeMM-Research, Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna, Austria; Department of Dermatology, University Hospital Essen, Essen, Germany; Whitehead Institute for Biomedical Research, Cambridge Center, Cambridge, MA, USA
InVEx funding source(s)
Supported by the NHGRI Large Scale Sequencing Program; grant U54 HG003067; the Melanoma Research Alliance; The University of Texas MD Anderson Cancer Center Melanoma Specialized Programs of Research Excellence and Melanoma Informatics, Tissue Resource, and Pathology (core grant P50 CA93459); and the NCI Support Grant (CA-16672).

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