intropolis specifications

Information


Unique identifier OMICS_11096
Name intropolis
Restrictions to use None
Data access File download
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Documentation


Maintainer


  • person_outline Jeffrey Leek

Publication for intropolis

intropolis citations

 (2)
call_split

Snaptron: querying splicing patterns across tens of thousands of RNA seq samples

2017
Bioinformatics
PMCID: 5870547
PMID: 28968689
DOI: 10.1093/bioinformatics/btx547
call_split See protocol

[…] a table summarizing evidence for exon-exon splice junctions across all samples. We also created tables detailing metadata for each sample. This is the source material for Snaptron as well as for the intropolis resource (). Snaptron also annotates each junction with: (i) gene annotation status (), (ii) count of samples with one or more reads covering the junction and (iii) junction coverage statis […]

library_books

Human splicing diversity and the extent of unannotated splice junctions across human RNA seq samples on the Sequence Read Archive

2016
Genome Biol
PMCID: 5203714
PMID: 28038678
DOI: 10.1186/s13059-016-1118-6

[…] ground variation in junction discovery levels. We have shown evidence that some unannotated and partially annotated junctions in human have translated analogs in mouse. We have introduced a resource, intropolis, for others to investigate junction variation, and we have provided an example of the utility of our resource in the case of ALK gene expression.While we observed many unannotated junctions […]

intropolis institution(s)
Department of Computer Science, Johns Hopkins University, Baltimore, MD, USA; Department of Biostatistics, Johns Hopkins University, Baltimore, MD, USA; Center for Computational Biology, Johns Hopkins University, Baltimore, MD, USA; Lieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, MD, USA; Department of Mental Health, Johns Hopkins University, Baltimore, MD, USA; Undergraduate Program on Genomic Sciences, National Autonomous University of Mexico, Mexico City, Mexico; Department of Mathematics and Computer Science, Centre College, Danville, KY, USA; Department of Biological Sciences, Salisbury University, Salisbury, MD, USA; Department of Biological Sciences, University of Texas at Austin, Austin, TX, USA; McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, MD, USA

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