iOMICS statistics

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iOMICS specifications

Information


Unique identifier OMICS_02159
Name iOMICS
Software type Framework/Library
Interface Command line interface
Restrictions to use License purchase required
Operating system Unix/Linux
Parallelization MapReduce
License Commercial
Computer skills Advanced
Stability Stable
High performance computing Yes
Maintained No

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iOMICS in publications

 (12)
PMCID: 5608948
PMID: 28935855
DOI: 10.1038/s41467-017-00413-x

[…] thus produced numerous public databases that have been instrumental at enabling genetics as a forerunner in precision medicine–. for instance, the predecessor of singapore integrative omics study (iomics), the singapore genome variation project, which only focused on making static genetic snp and human leukocyte antigen (hla) measurements, indeed facilitated numerous investigations […]

PMCID: 5529458
PMID: 28747677
DOI: 10.1038/s41598-017-06314-9

[…] it is reported that the method is more conservative on the fdr estimation for novel peptide identification when compared with single stage search., sequence logos were made using icelogo (http://iomics.ugent.be/icelogoserver/index.html) and weblogo (http://weblogo.berkeley.edu/logo.cgi). all logo images were made with the percent-difference scoring system. data for methionine processing, […]

PMCID: 5808925
PMID: 28329770
DOI: 10.1038/nature21433

[…] analyses, using either the cid or hcd fragmentation methods as defined above. both included singly-charged species., sequence logos for recovered mhc-i peptides were produced using icelogo http://iomics.ugent.de/icelogoserver to reveal position weighting at anchor residues. the size distribution of recovered mhc-i and mhc-ii bound peptides was compared to size distributions of known mhc-i […]

PMCID: 5376150
PMID: 28266913
DOI: 10.7554/eLife.24611.005

[…] cole j, farris r, schriml lm, de vos p, de baets b, field d, dawyndt p. 2008. laying the foundation for a genomic rosetta stone: creating information hubs through the use of consensus identifiers. iomics 12:123-127. verslyppe, b., de smet, w., de baets, b., de vos, p., dawyndt, p. (2011). make histri: reconstructing the exchange history of bacterial and archaeal type strains. syst appl […]

PMCID: 5054341
PMID: 27535140
DOI: 10.1074/mcp.M116.060368

[…] and data were processed as above, but with enzyme specificity set to “none” to identify peptide sequences that were generated upon calpain cleavage of denatured proteins. icelogo (http://iomics.ugent.be/icelogoserver/main.html) was used to visualize potential consensus cleavage patterns considering four amino acids n-terminal and c-terminal of cleavage sites, i.e. positions p4-p4′ […]


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