IonCom specifications

Unique identifier:
OMICS_16794
Restrictions to use:
None
Input format:
PDB, FASTA
Computer skills:
Basic
Maintained:
Yes
Interface:
Web user interface
Input data:
A structure or sequence file, a selected ligand type, the user’s email address.
Output data:
The sequence with binding residues highlighted in red color, the predicted binding residues, a 3D view of the structure with binding residues highlighted in red color.
Stability:
Stable

IonCom specifications

Unique identifier:
OMICS_16794
Interface:
Command line interface
Input data:
A structure or sequence file, a selected ligand type, the user’s email address.
Output data:
The sequence with binding residues highlighted in red color, the predicted binding residues, a 3D view of the structure with binding residues highlighted in red color.
Stability:
Stable
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Input format:
PDB, FASTA
Computer skills:
Advanced
Source code URL:
https://zhanglab.ccmb.med.umich.edu/IonCom/IonCom.tar.bz2

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IonCom support

Maintainer

  • Xiuzhen Hu <>
  • Xiuzhen Hu <>

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Publications

Institution(s)

Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA; College of Sciences, Inner Mongolia University of Technology, Hohhot, China; Institute for Data Science and Engineering, East China Normal University, Shanghai, China; School of Mathematical Sciences, Nankai University, Tianjin, China; Department of Biological Chemistry, University of Michigan, Ann Arbor, MI, USA

Funding source(s)

This work was supported in part by National Natural Science Foundation of China (30960090, 31260203, 11501306) and National Institute of Health (GM083107 and GM116960).

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