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IonGAP specifications


Unique identifier OMICS_08642
Name IonGAP
Interface Web user interface
Restrictions to use None
Biological technology Life Technologies
Computer skills Basic
Stability Stable
Maintained Yes


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Publication for IonGAP

IonGAP citations


Genomic and molecular characterization of a novel quorum sensing molecule in Bacillus licheniformis

PMCID: 5385187
PMID: 28391484
DOI: 10.1186/s13568-017-0381-6
call_split See protocol

[…] mission can be found at GenBank: DNA sequences data in FASTA format was obtained from the Ion Reporter 5.0 software. The assembled sequence was annotated through IonGap Annotation Service (, an integrated Genome Analysis Platform for Ion Torrent sequence data. The phylogenetic analysis was carried out by aligning amino acid sequences […]


Complete Genome Sequence of Mycoplasma pullorum Isolated from Domestic Chickens

Genome Announc
PMCID: 5323620
PMID: 28232441
DOI: 10.1128/genomeA.01647-16
call_split See protocol

[…] length of 185.12 nt and approximately 60× coverage. The genome was assembled de novo in CLC Genomics Workbench version 8.5.1 to create two contig sets. The Ion Torrent data set was also submitted to IonGap ( for de novo assembly to create a third contig set (). The three contig data sets were then aligned in the CLC Genome Finishing Tool version 1.5.4 and systematically […]


Streptococcal group B integrative and mobilizable element IMESag rpsI encodes a functional relaxase involved in its transfer

Open Biol
PMCID: 5090054
PMID: 27707895
DOI: 10.1098/rsob.160084

[…] emistry. A total of 121 Mb was obtained (686 800 reads, mean read length approximately 177 bp). Raw sequence data were deposited in the Sequence Read Archive under the accession number SRP060555. The IonGAP web platform ( was used for performing genome assembly, gene prediction, SNP calling and functional annotation. The S. agalactiae strain SS1 genome sequence (CP010867. […]


Draft Genome Sequence of Taylorella equigenitalis Strain ERC_G2224 Isolated from the Semen of a Lipizzaner Stallion in South Africa

Genome Announc
PMCID: 4611696
PMID: 26472845
DOI: 10.1128/genomeA.01205-15

[…] <80×) into 18 large contigs (>500 bp), giving a consensus length of 1,670,247 bp; the contigs were ordered and compared with the genome of T. equigenitalis strain MCE9 (accession no. CP002456) using IonGAP: integrative bacterial genome analysis for Ion Torrent sequence data, released in 2015 ( (). Annotation was added by the NCBI Prokaryotic Genome Annotation Pip […]


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IonGAP institution(s)
Information Technology Department, Instituto Tecnológico y de Energías Renovables (ITER), Santa Cruz de Tenerife, Spain; Applied Genomics Group (G2A), Instituto Universitario de Enfermedades Tropicales y Salud Pública de Canarias (CIBICAN), Universidad de La Laguna, Santa Cruz de Tenerife, Spain; Research Unit, Hospital Universitario Nuestra Señora de Candelaria, Santa Cruz de Tenerife, Spain; Departamento de Ingeniería Informática y de Sistemas, Universidad de La Laguna, Santa Cruz de Tenerife, Spain; CIBER de Enfermedades Respiratorias, Instituto de Salud Carlos III, Madrid, Spain

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