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IPAD specifications

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Unique identifier OMICS_02708
Name IPAD
Alternative name Integrated Pathway Analysis Database
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained No

Publication for Integrated Pathway Analysis Database

IPAD citations

 (13)
library_books

RNA seq analysis of the kidneys of broiler chickens fed diets containing different concentrations of calcium

2017
PMCID: 5603577
PMID: 28924246
DOI: 10.1038/s41598-017-11379-7

[…] correlative (figure )., we used database for annotation, visualization and integrated discovery (david), search tool for the retrieval of interacting genes/proteins (string), coremine database, and integrated pathway analysis database for systematic enrichment analysis (ipad) database for pathway enrichment, protein/protein interaction networks, and analysis of degs co-occurrence in the kidney […]

library_books

Post weaning blood transcriptomic differences between Yorkshire pigs divergently selected for residual feed intake

2016
PMCID: 4724083
PMID: 26801403
DOI: 10.1186/s12864-016-2395-x

[…] genes in the pig genome annotation (version 79) were reported., we performed other enrichment analyses of the degs (q ≤ 0.15) using ingenuity pathway analysis (ipa, 2015 spring release) and the integrated pathway analysis database (ipad) for systematic enrichment analysis []. for ipa-based analysis, 8965 of the 12280 genes could be mapped to ipa identifiers via the gene symbols of pig genes […]

library_books

NRP1 is targeted by miR 130a and miR 130b, and is associated with multidrug resistance in epithelial ovarian cancer based on integrated gene network analysis

2015
PMCID: 4686085
PMID: 26573160
DOI: 10.3892/mmr.2015.4556

[…] text mining methods from the literature and disease levels were combined to screen for mdr-associated genes in eoc, which were performed in the coremine (http://www.coremine.com/medical/#search) and ipad (http://bioinfo.hsc.unt.edu/ipad/) () databases, respectively. the corresponding genes and the exact keywords 'drug resistance', 'drug resistance, multiple' and 'drug resistance, neoplasm' […]

library_books

Biotechnology landscape in cancer drug discovery

2015
PMCID: 5137916
PMID: 28031887
DOI: 10.4155/fso.15.10

[…] was developed using next-generation mutation technology. mut-map detected 120 somatic mutations in 11 therapeutic genes [,]., ngs-generated data need specific interpretation, hence recently an integrated pathway analysis database was designed in order to analyze new and existing drug treatment options in particular stratified patients. therefore, systematically integrating pathway – […]

library_books

Pathway based Biomarkers for Breast Cancer in Proteomics

2015
PMCID: 4324474
PMID: 25972728
DOI: 10.4137/CIN.S14069

[…] pathways. pathway-based biomarkers may be a reliable diagnostic tool for early detection of breast cancer due to the fact that breast cancer is not a single homogeneous disease. we applied integrated pathway analysis database (ipad) and gene set enrichment analysis (gsea) approaches to the study of pathway-based biomarker discovery problem in breast cancer proteomics. our strategy […]

library_books

Integrated Pathway Clusters with Coherent Biological Themes for Target Prioritisation

2014
PMCID: 4053319
PMID: 24918583
DOI: 10.1371/journal.pone.0099030

[…] from various biological databases. the david gene functional classification tool employs a heuristic approach to grouping genes into modules based on similarities in the biological annotations . ipad defines inter-associations between pathways, disease, drugs and organ specificity based on the overlapping gene associations . intpath examines overlaps between genes, gene pairs and pathway […]


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IPAD institution(s)
Department of Academic and Institutional Resources and Technology, University of North Texas Health Science Center, Fort Worth, USA

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