IPAD statistics

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Citations per year

Number of citations per year for the bioinformatics software tool IPAD

Tool usage distribution map

This map represents all the scientific publications referring to IPAD per scientific context
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IPAD specifications


Unique identifier OMICS_02708
Alternative name Integrated Pathway Analysis Database
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained No

Publication for Integrated Pathway Analysis Database

IPAD citations


RNA seq analysis of the kidneys of broiler chickens fed diets containing different concentrations of calcium

Sci Rep
PMCID: 5603577
PMID: 28924246
DOI: 10.1038/s41598-017-11379-7

[…] n a linear way (FABP4, GAL2, LECT2 and NUP210) were more correlated than linearly decreased DEGs (KLF2, HPX, ADAMTS-8, TMEM8A, AP3S2 and PGC). Text mining edgeR-identified DEGs using the COREMINE and IPAD databases revealed that many DEGs were associated with chicken, kidney, Ca, and several common diseases. However, we mainly focused on weight gain, hypertension, oxidative stress, and blood press […]


Post weaning blood transcriptomic differences between Yorkshire pigs divergently selected for residual feed intake

BMC Genomics
PMCID: 4724083
PMID: 26801403
DOI: 10.1186/s12864-016-2395-x

[…] ells were considered. The cutoff for the log2 (fold change) was set to 0 and the q-value cutoff was set to 0.15. All DEGs were analyzed together, with 1488 of 1972 DEGs mapped to IPA identifiers. For IPAD-based analysis of DEGs, the IPAD web server [] was used. Of the 1972 DEGs (q ≤ 0.15), 1536 genes with human gene symbols were analyzed together. The default reference set was used, as the IPAD se […]


Gene Expression in Experimental Aortic Coarctation and Repair: Candidate Genes for Therapeutic Intervention?

PLoS One
PMCID: 4514739
PMID: 26207811
DOI: 10.1371/journal.pone.0133356

[…] severity of AMPD1 C34T mutations in human patients previously undergoing correction for CoA. This may be a particular area of interest given the large number of DEGs within the metabolism pathway of IPAD and IPA, which is shown in .Our results also showed a >6 FC change in ATP2A1, commonly known as sarco/endoplasmic reticulum Ca2+ ATPase (i.e. SERCA). SERCA plays a role in mediating NO function i […]


Pathway based Biomarkers for Breast Cancer in Proteomics

Cancer Inform
PMCID: 4324474
PMID: 25972728
DOI: 10.4137/CIN.S14069

[…] -SNP, may facilitate the identification of disease-associated SNPs and pathways, as well as the understanding of the underlying biological mechanisms.Therefore, we presented an approach that combines Integrated Pathway Analysis Database (IPAD) and GSEA together for the identification of pathway-based biomarkers from breast cancer proteomics. Moreover, a Support Vector Machine (SVM) model with thre […]


Computational framework to support integration of biomolecular and clinical data within a translational approach

BMC Bioinformatics
PMCID: 3688149
PMID: 23742129
DOI: 10.1186/1471-2105-14-180

[…] he problem addressed. CerealsDB [] is a database of genomic information about wheat. IBDsite [] is a platform to aggregate and analyze biomolecular data involved in inflammatory bowel diseases (IBD). IPAD [] and Atlas [] are more general approaches because they aggregate data from several public genomic databases such as KEGG, GenBank, and Uniprot.On the other hand, there are biological databases […]

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IPAD institution(s)
Department of Academic and Institutional Resources and Technology, University of North Texas Health Science Center, Fort Worth, USA

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