iPathwayGuide statistics

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chevron_left Gene Ontology annotation Annotation workflows Disease-related genes prediction Signaling pathways miRNA precursor prediction chevron_right
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Associated diseases

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iPathwayGuide specifications

Information


Unique identifier OMICS_05011
Name iPathwayGuide
Alternative name PathwayGuide
Software type Application/Script
Interface Graphical user interface
Restrictions to use License purchase required
Operating system Unix/Linux
License Commercial
Computer skills Medium
Stability Stable
Registration required Yes
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Versioning


Add your version

Documentation


Maintainer


  • person_outline PathwayGuide Team <>

Additional information


https://advaitabio.com/ipathwayguide-faqs/ https://advaitabio.com/ipathwayguide-tutorials/

iPathwayGuide in publications

 (19)
PMCID: 5906602
PMID: 29670130
DOI: 10.1038/s41598-018-24425-9

[…] down-regulated in s100a8/a9 treated mscs during 6 and 24 h. to further study the pathways which are different in s100a8/a9 treated mscs compared to control mscs, impact analysis was performed using ipathwayguide and the gene trail tool (fig. ). seven major pathways were uncovered in s100a8/a9 treated mscs using topological analysis. the most significant pathways included cell motility, […]

PMCID: 5896901
PMID: 29649237
DOI: 10.1371/journal.pone.0194803

[…] differentially expressed genes (table a in )., gene ontology and pathway analysis of differentially expressed genes in ipf, was performed using the ipathways web resource (http://www.advaitabio.com/ipathwayguide) with the gene ontology (go) consortium database (release 09/19/2014) and the (kyoto encyclopedia of genes and genomes, kegg, database, release 78.0+/06-02, jun 16) [], using the 88 […]

PMCID: 5733474
PMID: 29321746
DOI: 10.3389/fpsyt.2017.00271

[…] 1https://www.qiagenbioinformatics.com/products/ingenuity-pathway-analysis/., 2https://bioportal.bioontology.org/projects/onto-express. note: the original onto-express has been developed to ipathwayguide (advaita, plymouth, mi) at website: https://www.advaitabio.com/gene-ontology-pathway-analysis.html., 3http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=gse107015., the supplementary […]

PMCID: 5720034
PMID: 29270020
DOI: 10.2147/OTT.S144002

[…] cufflinks software was used for assembly of transcripts based on location information of known transcripts in the genome., pathway analysis and gene ontology (go) classification were performed using ipathwayguide online bioinformatics tool (https://apps.advaitabio.com). go clustering was performed by david online software (https://david.ncifcrf.gov/). yap gene expression data were downloaded […]

PMCID: 5709103
PMID: 28971903
DOI: 10.3324/haematol.2017.172866

[…] expressed genes were defined as log2fc>|0.6| and p<0.05 after controlling the false discovery rate (fdr) using the benjamini–hochberg procedure. pathway analysis was performed using the ipathwayguide web application (advaita, plymouth, mi, usa). statistical thresholds were set at p<0.05 and log2fc>|0.6|. microarray data are available at gene expression omnibus (geo; accession […]


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iPathwayGuide institution(s)
Advaita Corporation, Plymouth, MI, USA

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