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Protocols

iProLINK specifications

Information


Unique identifier OMICS_25503
Name iProLINK
Alternative name integrated Protein Literature, Information and Knowledge
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes

Maintainer


  • person_outline iProClass Team

Publication for integrated Protein Literature, Information and Knowledge

iProLINK citations

 (3)
call_split

eGenPub, a text mining system for extending computationally mapped bibliography for UniProt Knowledgebase by capturing centrality

2017
PMCID: 5691349
PMID: 29220476
DOI: 10.1093/database/bax081
call_split See protocol

[…] he development of the system. Altogether 212 instances of AC–PMID pairs were annotated from these 100 abstracts. The evaluation corpus is publicly available at http://research.bioinformatics.udel.edu/iprolink/corpora.php.As discussed in our previous paper, most of the existing gene normalization tools are either designed for non-plant species or not publicly accessible. Thus, we are only able to c […]

library_books

BioC compatible full text passage detection for protein–protein interactions using extended dependency graph

2016
PMCID: 4915133
PMID: 27170286
DOI: 10.1093/database/baw072

[…] ions of this set of articles. shows the results of PPI passage detection. On this 20 in-house datasets, we obtained 80.5% in f-value. We linked the dataset from http://proteininformationresource.org/iprolink/corpora. Our system did not distinguish PPI passages that correspond to results experimentally validated in the article (“new” PPIs) versus passages that do not. However, curators are probabl […]

library_books

BioC interoperability track overview

2014
PMCID: 4074764
PMID: 24980129
DOI: 10.1093/database/bau053

[…] full adoption of BioC for broad dissemination of resources developed by the text mining group at the University of Delaware and the Protein Information Resource (http://proteininformationresource.org/iprolink), including curated literature corpora and text mining tools. […]

Citations

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iProLINK institution(s)
Georgetown University Medical Center, Washington, DC, USA; Georgetown University, Washington, DC, USA; University of Maryland at Baltimore County, Baltimore, MD, USA
iProLINK funding source(s)
Supported by grants ITR-0205470, DBI0138188, and IIS-0430743 from the National Science Foundation and grant U01-HG02712 from the National Institutes of Health, USA.

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