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iProLINK specifications


Unique identifier OMICS_25503
Name iProLINK
Alternative name integrated Protein Literature, Information and Knowledge
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes


  • person_outline iProClass Team

Publication for integrated Protein Literature, Information and Knowledge

iProLINK citations


eGenPub, a text mining system for extending computationally mapped bibliography for UniProt Knowledgebase by capturing centrality

PMCID: 5691349
PMID: 29220476
DOI: 10.1093/database/bax081
call_split See protocol

[…] he development of the system. Altogether 212 instances of AC–PMID pairs were annotated from these 100 abstracts. The evaluation corpus is publicly available at http://research.bioinformatics.udel.edu/iprolink/corpora.php.As discussed in our previous paper, most of the existing gene normalization tools are either designed for non-plant species or not publicly accessible. Thus, we are only able to c […]


BioC compatible full text passage detection for protein–protein interactions using extended dependency graph

PMCID: 4915133
PMID: 27170286
DOI: 10.1093/database/baw072

[…] ions of this set of articles. shows the results of PPI passage detection. On this 20 in-house datasets, we obtained 80.5% in f-value. We linked the dataset from http://proteininformationresource.org/iprolink/corpora. Our system did not distinguish PPI passages that correspond to results experimentally validated in the article (“new” PPIs) versus passages that do not. However, curators are probabl […]


BioC interoperability track overview

PMCID: 4074764
PMID: 24980129
DOI: 10.1093/database/bau053

[…] full adoption of BioC for broad dissemination of resources developed by the text mining group at the University of Delaware and the Protein Information Resource (http://proteininformationresource.org/iprolink), including curated literature corpora and text mining tools. […]


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iProLINK institution(s)
Georgetown University Medical Center, Washington, DC, USA; Georgetown University, Washington, DC, USA; University of Maryland at Baltimore County, Baltimore, MD, USA
iProLINK funding source(s)
Supported by grants ITR-0205470, DBI0138188, and IIS-0430743 from the National Science Foundation and grant U01-HG02712 from the National Institutes of Health, USA.

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