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iProX specifications


Unique identifier OMICS_06098
Name iProX
Restrictions to use None
Community driven No
Data access Browse, Application programming interface
User data submission Allowed
Maintained No

Additional information


Publication for iProX

iProX citations


A proteomics landscape of circadian clock in mouse liver

Nat Commun
PMCID: 5908788
PMID: 29674717
DOI: 10.1038/s41467-018-03898-2

[…] All Mass Spectrum raw data and the MaxQuant output tables have been deposited to iProX and can be accessed with the iProX accession: IPX0001145000, (TF DBA pattern and whole-liver proteome), IPX0001158000, (Nuclear proteome, phosphoproteome, ubiquitylation proteome and KC sub-prot […]


Urine Proteome Profiling Predicts Lung Cancer from Control Cases and Other Tumors

PMCID: 5952250
PMID: 29576497
DOI: 10.1016/j.ebiom.2018.03.009

[…] ssessed by LC-MS/MS to guarantee the instrument reproducibility. Sample metadata were summarized in Supplementary Table S1. All raw files and search results have been deposited in ProteomeXchange via iProX (ww.iprox.org) with the identification no.: PXD008846 or IPX0001153000. […]


Physiological and Proteomic Responses of Contrasting Alfalfa (Medicago sativa L.) Varieties to PEG Induced Osmotic Stress

Front Plant Sci
PMCID: 5835757
PMID: 29541085
DOI: 10.3389/fpls.2018.00242

[…] sfully identified. Every confident protein was identified by at least one unique peptide. All MS-based proteomic data related to this study has been public available on integrated Proteome resources (iProX) with ID IPX0000979000/ PXD008922. Proteins containing at least two unique spectra were selected for quantification of proteins (). The relative quantification of proteins was based on the weigh […]


Proteogenomic characterization and integrative analysis of glioblastoma multiforme

PMCID: 5722563
PMID: 29228611
DOI: 10.18632/oncotarget.21937
call_split See protocol

[…] engines. The Maxquant peptide and protein quantification results files were imported into Perseus software (version for further analysis. All of the MS proteomics data have been deposited to iProX (http://www.iprox.org/index) and can be accessed with the accession IPX00084901. […]


Improvement of peptide identification with considering the abundance of mRNA and peptide

BMC Bioinformatics
PMCID: 5311845
PMID: 28201984
DOI: 10.1186/s12859-017-1491-5

[…] 129; MS/MS data: https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/PASS_View?identifier=PASS00215]. The RNA-Seq and proteomics data sets of mouse liver can be downloaded at Short Read Archive and iProx [RNA-Seq data: www.ncbi.nlm.nih.gov/sra/SRX386467; MS/MS data:, FTP site for MS/MS data downloading: […]


The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition

Nucleic Acids Res
PMCID: 5210636
PMID: 27924013
DOI: 10.1093/nar/gkw936

[…] lopments in the realm of MS data sharing repositories.It is important to note that the consortium remains open to accept new members. In this context, one resource that may join in the near future is iPROX (http://www.iprox.cn/), supported by the Beijing Proteome Research Center. Finally, we want to highlight that up-to date documentation is linked from the PX website (http://www.proteomexchange.o […]


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iProX institution(s)
State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Life Omics, Beijing, China; Chongqing University of Posts and Telecommunications, Chongqing, China; National Supercomputing Center in Changsha, Hunan University, Changsha, China; Shanghai Center for Bioinformation Technology, Shanghai Institutes of Biomedicine, Shanghai Academy of Science and Technology, Shanghai, China; Computer Network Information Center, Chinese Academy of Sciences, Beijing, China; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Cambridge, UK
iProX funding source(s)
Supported by National Key Research Program of China [2016YFC0901701, 2016YFB0201702, 2016YFC0901601]; International Scientific and Technological Cooperation project of China [2014DFB30010, 2014DFB30030]; National High Technology Research and Development Program of China [2015AA020108]; National Science Foundation of China [21475150 to Z. Y.]; and BBSRC International Partnering Award [BB/N022432/1].

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