iPSORT statistics

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Citations per year

Number of citations per year for the bioinformatics software tool iPSORT
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Tool usage distribution map

This map represents all the scientific publications referring to iPSORT per scientific context
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Associated diseases

This word cloud represents iPSORT usage per disease context
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Protocols

iPSORT specifications

Information


Unique identifier OMICS_29156
Name iPSORT
Alternative name caml-iPSORT
Interface Web user interface
Restrictions to use None
Input data An amino acid sequence.
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Hideo Bannai

Additional information


http://ipsort.hgc.jp/how.html

Information


Unique identifier OMICS_29156
Name iPSORT
Alternative name caml-iPSORT
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Programming languages OCaml
Computer skills Advanced
Stability Stable
Maintained Yes

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Versioning


No version available

Maintainer


  • person_outline Hideo Bannai

Additional information


http://ipsort.hgc.jp/how.html

Publication for iPSORT

iPSORT citations

 (134)
library_books

CO2 sensitive tRNA modification associated with human mitochondrial disease

2018
Nat Commun
PMCID: 5951830
PMID: 29760464
DOI: 10.1038/s41467-018-04250-4

[…] ned the subcellular localization of C-terminally FLAG-tagged OSGEPL1 transiently expressed in HeLa cells. As shown in Fig. , OSGEPL1 was predominantly localized in mitochondria. Consistent with this, iPSORT analysis predicted the existence of an MTS in the N-terminal region (positions 1–33) of OSGEPL1 (Supplementary Fig. ). The OSGEPL1 variant with the MTS truncation (Δ2–33) did not translocate to […]

library_books

The draft genome of Kipferlia bialata reveals reductive genome evolution in fornicate parasites

2018
PLoS One
PMCID: 5874029
PMID: 29590215
DOI: 10.1371/journal.pone.0194487

[…] known proteins (e.g., homologs of bacteria).The presence of mitochondria-targeting signals in the proteins in question were evaluated using three different programs—MitoFates, TPpred2 and TargetP and IPSORT [–]. The N-termini of the predicted proteins were manually curated using the genome and transcriptome data. If N-termini of the proteins predicted from genome data were truncated, the N-termini […]

library_books

Nuclear targeting of the betanodavirus B1 protein via two arginine rich domains induces G1/S cell cycle arrest mediated by upregulation of p53/p21

2018
Sci Rep
PMCID: 5814437
PMID: 29449573
DOI: 10.1038/s41598-018-21340-x

[…] Potential targeting signal peptides in the B1 protein were identified by running the iPSORT and TargetP 1.1 programs (Fig. ) for the R and K residues. The predicted targeting domains were labeled domain A (32PRRAR36), domain B (46ARRSRR51), domain C (63VRDKRPRR70) and domain D (101VRQ […]

library_books

A novel gene of Kalanchoe daigremontiana confers plant drought resistance

2018
Sci Rep
PMCID: 5803263
PMID: 29416051
DOI: 10.1038/s41598-018-20687-5

[…] Conserved Domain Search program (http://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi), and CDS-encoding protein characteristics were predicted using the ProtParam (http://web.expasy.org/protparam/), iPSORT (http://ipsort.hgc.jp/), and PSIPRED (http://bioinf.cs.ucl.ac.uk/psipred/) programs. […]

library_books

Genome wide comparative analysis of papain like cysteine protease family genes in castor bean and physic nut

2018
Sci Rep
PMCID: 5762910
PMID: 29321580
DOI: 10.1038/s41598-017-18760-6

[…] Protein properties were determined using the online tool ProtParam (http://web.expasy.org/protparam/) and subcellular localization was predicted using iPSORT (http://ipsort.hgc.jp/). Conserved motifs were analyzed using the MEME Suite (http://meme-suite.org/tools/meme) as described before. […]

library_books

Rethinking the evolution of eukaryotic metabolism: novel cellular partitioning of enzymes in stramenopiles links serine biosynthesis to glycolysis in mitochondria

2017
BMC Evol Biol
PMCID: 5715807
PMID: 29202688
DOI: 10.1186/s12862-017-1087-8

[…] ences were analyzed using TargetP and ChlorP []. Sequences from diatoms and brown algae were evaluated using Hectar [] and ASAFind []. In some cases, the results were compared to those of Wolf PSORT, iPSORT, and PredAlgo in an attempt to reach consensus [–]. When sequences from a species appeared to be outliers, or the proteins did not start with methionine, the 5′ ends of each gene model were eva […]


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iPSORT institution(s)
Human Genome Center, Institute of Medical Science, University of Tokyo, Tokyo, Japan; Department of Mathematical Sciences, Tokai University, Kanagawa, Japan; Faculty of Mathematics, Kyushu University, Kyushu University, Fukuoka, Japan

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