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- person_outline Karen Ross
Publication for iPTMnet
Integrative annotation and knowledge discovery of kinase post translational modifications and cancer associated mutations through federated protein ontologies and resources
[…] ehensive protein resource, UniProt, there are resources that specialize in specific species such as neXtProt for human and the Mouse Genome Informatics (MGI) for mouse. The Protein Ontology (PRO) and iPTMnet capture specific data types on proteoforms and post-translational modifications (PTMs), respectively, across multiple species. The Catalog of Somatic Mutations in Cancer (COSMIC) captures info […]
iPTMnet: an integrated resource for protein post translational modification network discovery
[…] PRO constitutes a crucial part of the iPTMnet dataset as it places the PTM site information in the context of proteoforms, i.e. it shows the combination of PTMs that have been observed in a given protein. This feature of representing expe […]
Bioinformatics Knowledge Map for Analysis of Beta Catenin Function in Cancer
[…] ed to results of prediction tools), along with clear links to supporting evidence, preferably to articles in the scientific literature. For phosphorylation information, we used our recently developed iPTMnet database (http://proteininformationresource.org/iPTMnet/), which provides a unified presentation of PTM information text-mined from the scientific literature and from multiple high-quality cur […]
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