iPTREE-STAB statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Stability change prediction chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

iPTREE-STAB specifications

Information


Unique identifier OMICS_07146
Name iPTREE-STAB
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for iPTREE-STAB

iPTREE-STAB in publications

 (6)
PMCID: 5903617
PMID: 29664915
DOI: 10.1371/journal.pone.0195971

[…] for structure predictions of pitx2, sequence in fasta format was obtained from ncbi database (np_001191327.1)., eight different protein stability programs (duet, sdm, mcsm i-mutant3.0, mupro, iptree-stab, cupsat, and istable) were used to predict the effects of missense mutations on the stability of pitx2 protein. duet is a web server that uses integrated computational approach to predict […]

PMCID: 5490637
PMID: 28290225
DOI: 10.1080/14760584.2017.1306441

[…] but in general are rather runtime-intensive. thus, they are restricted to investigate only a comparably small number of mutations. machine learning methods are either sequence based (e.g. mustab, iptree-stab, inps) or structure based (e.g. inps3d, mcsm, popmusic). they provide good prediction accuracy and in general are faster than the aforementioned methods. hence, they are better suited […]

PMCID: 4100115
PMID: 24886813
DOI: 10.3390/ijms15069670

[…] machine learning approaches to decipher the stability changes due to mutations. namely, these servers are eslpred [], svmprot [], svmprat [,], automute [,], fish [,], ond-crf [], prosms, protsrf, iptree-stab [], mupro, scide [,], scpred [], mustab [,], popmusic, pmut [,,], snap [], snps and gene ontology (snps&go) [], parepro [], canpredict [], nssnpanalyzer [,,], mutpred [], hansa [,], […]

PMCID: 3666215
PMID: 23741632
DOI: 10.1089/biores.2013.0007

[…] of both sequence homology–based (sift) and structural homology–based (polyphen) algorithms. thereafter, we computed the stability of mutants in units of free energy using i-mutant 3.0, mustab, and iptree-stab programs and identified seven crucial point mutations (v89m, v105g, c290y, i418n, r669c, i744t, and a1131t) in epidermal growth factor receptor 3 that are manifested as nssnps. […]

PMCID: 3389531
PMID: 22888292
DOI: 10.1590/S1415-47572012000300009

[…] (l12407) and canis familiaris (q68ci2) dbh sequences were aligned using clustalx 2.0.8. the possible effects of the amino acid substitutions introduced by the eight nssnps were predicted using the iptree-stab server (). this software predicted the stability of the mutant proteins produced by the eight nssnps. the parameters used for the iptree-stab server included a ph of 7 and a temperature […]


To access a full list of publications, you will need to upgrade to our premium service.

iPTREE-STAB institution(s)
Department of Computer Science and Information Engineering, Ming-Dao University, Changhua, Taiwan

iPTREE-STAB reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review iPTREE-STAB