IQ-TREE specifications

Information


Unique identifier OMICS_11543
Alternative name W-IQ-TREE
Interface Web user interface
Restrictions to use None
Input data DNA, amino acids, codons, binary and morphological data.
Input format PHYLIP, FASTA, Nexus, Clustal, MSF
Output data A self-readable report file and a NEWICK tree file.
Output format NEWICK
Programming languages PHP
Computer skills Basic
Version 1.4.2
Stability Stable
Maintained Yes
Wikipedia https://github.com/Cibiv/IQ-TREE/wiki

Subtool


  • ModelFinder

Documentation


Maintainer


  • person_outline Bui Quang Minh <>

Additional information


ModelFinder, implemented in IQ-TREE, is available here: http://www.iqtree.org/ModelFinder/ https://github.com/Cibiv/IQ-TREE/

Information


Unique identifier OMICS_11543
Alternative name W-IQ-TREE
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format PHYLIP, FASTA, Nexus, Clustal, MSF
Operating system Unix/Linux, Mac OS, Windows
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.6
Stability Beta
Source code URL https://codeload.github.com/Cibiv/IQ-TREE/tar.gz/v1.6.beta4
Maintained Yes
Wikipedia https://github.com/Cibiv/IQ-TREE/wiki

Subtool


  • ModelFinder

Download


Versioning


Add your version

Documentation


Maintainer


  • person_outline Bui Quang Minh <>

Additional information


ModelFinder, implemented in IQ-TREE, is available here: http://www.iqtree.org/ModelFinder/ https://github.com/Cibiv/IQ-TREE/

IQ-TREE articles

IQ-TREE citations

 (2)
2018
PMCID: 5954228

[…] corresponding to appropriate substitutional models, the best partition scheme, phylogenomic tree reconstruction, and ultrafast bootstrap analyses were all inferred and analyses conducted within the iq-tree v1.5.3 package (114–116). in order to test whether the revealed integer-multiple pattern of genome sizes was due to interspecies hybridization, we estimated the phylogenetic relationship […]

2018
PMCID: 5923437

[…] subfamily [1]. multiple sequence alignment (msa) was carried out using revtrans 2.0 [16] with manual adjustment. the alignments of the core of the ns and vp protein ml trees were inferred using iq-tree version 1.4.3 software based on an lg+f+g4 protein substitution model to the core of an ns protein with 145 amino acids and an lg+f+i+g4 protein substitution model to the core of a vp protein […]

IQ-TREE institution(s)
Center for Integrative Bioinformatics, Max F Perutz Laboratories, University of Vienna, Medical University of Vienna, Vienna, Austria; Bioinformatics and Computational Biology, Faculty of Computer Science, University of Vienna, Vienna, Austria
IQ-TREE funding source(s)
IQ-TREE was partially funded by the Austrian Science Fund - FWF (grants I 760-B17 from 2012-2015 and I 2508-B29 from 2016-2019) and the University of Vienna (Initiativkolleg I059-N from 2011-2014).

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