IQ-TREE specifications

Unique identifier:
OMICS_11543
Interface:
Web user interface
Input data:
DNA, amino acids, codons, binary and morphological data.
Output data:
A self-readable report file and a NEWICK tree file.
Programming languages:
PHP
Version:
1.4.2
Maintained:
Yes
Alternative name:
W-IQ-TREE
Restrictions to use:
None
Input format:
PHYLIP, FASTA, Nexus, Clustal, MSF
Output format:
NEWICK
Computer skills:
Basic
Stability:
Stable
Wikipedia:
https://github.com/Cibiv/IQ-TREE/wiki

Subtools

  • ModelFinder

IQ-TREE specifications

Unique identifier:
OMICS_11543
Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Stability:
Beta
Maintained:
Yes
Alternative name:
W-IQ-TREE
Interface:
Command line interface
Input format:
PHYLIP, FASTA, Nexus, Clustal, MSF
License:
GNU General Public License version 2.0
Version:
1.6
Source code URL:
https://codeload.github.com/Cibiv/IQ-TREE/tar.gz/v1.6.beta4
Wikipedia:
https://github.com/Cibiv/IQ-TREE/wiki

Subtools

  • ModelFinder

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IQ-TREE distribution

download

IQ-TREE support

Documentation

Maintainer

  • Bui Quang Minh <>
  • Bui Quang Minh <>

Additional information

ModelFinder, implemented in IQ-TREE, is available here: http://www.iqtree.org/ModelFinder/ https://github.com/Cibiv/IQ-TREE/

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Publications

Institution(s)

Center for Integrative Bioinformatics, Max F Perutz Laboratories, University of Vienna, Medical University of Vienna, Vienna, Austria; Bioinformatics and Computational Biology, Faculty of Computer Science, University of Vienna, Vienna, Austria

Funding source(s)

IQ-TREE was partially funded by the Austrian Science Fund - FWF (grants I 760-B17 from 2012-2015 and I 2508-B29 from 2016-2019) and the University of Vienna (Initiativkolleg I059-N from 2011-2014).

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