IQRray specifications

Information


Unique identifier OMICS_02244
Name IQRray
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability No
Maintained No

Versioning


No version available

Publication for IQRray

IQRray citations

 (2)
library_books

Curated compendium of human transcriptional biomarker data

2018
Sci Data
PMCID: 5903354
PMID: 29664470
DOI: 10.1038/sdata.2018.66

[…] We evaluated each sample using the IQRray software, which produces a quality score for individual samples. Using these metrics, we applied Grubb’s statistical test (outliers package) to each dataset, identified poor-quality outliers () […]

library_books

Mining, Validation, and Clinical Significance of Colorectal Cancer (CRC) Associated lncRNAs

2016
PLoS One
PMCID: 5082825
PMID: 27788162
DOI: 10.1371/journal.pone.0164590

[…] database (http://www.ncbi.nlm.nih.gov/gds/) for all HGU133PLUS2.0 microarray data related to CRC. Data were revised to exclude instances of less than 10 cancerous and paracancerous samples per group. IQRray_score [] and presence/absence call [] were used to ensure the overall quality of microarray data and exclude any abnormal specimens. A platform called GATExplorer [] was used to analyze microar […]

IQRray institution(s)
Department of Ecology and Evolution, University of Lausanne and Swiss Institute of Bioinformatics, Lausanne, Switzerland

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