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IQuant specifications


Unique identifier OMICS_10390
Name IQuant
Software type Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Windows
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes



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  • person_outline Dr. Siqi Liu <>

Publication for IQuant

IQuant in publications

PMCID: 5951493
PMID: 29659507
DOI: 10.3390/ma11040609

[…] albumin (66 kd, sds-page marker from sigma-aldrich, cleveland, oh, usa) was added to an ultra-low molecular-weight standard. the protein bands on the coomassie blue stained gel were analyzed using iquant capture 300 software (ge healthcare, buckinghamshire, uk). the electrophoresis was performed in triplicate to authenticate the self-organized peptides. , the lyophilized matter of in-solution […]

PMCID: 5846740
PMID: 29529074
DOI: 10.1371/journal.pone.0193462

[…] da for ms scans and 100~1800 da for ms 2 scans., protein identification was analyzed with the cutoff: mascot percolator [] q-value < = 0.01 and protein quantification was applied using bgi's iquant []. proteins with a 1.2 fold change and a q-value of less than 0.05 were determined as differentially expressed proteins (deps)., as with our previous cytological analysis of the anthers […]

PMCID: 5877528
PMID: 29495482
DOI: 10.3390/ijms19030667

[…] each confident protein identification involves at least one unique peptide with a confidence interval ā‰„95% according to the mascot probability scores. , protein quantitation was performed using iquant software (v2.2.1, bgi-shenzhen, shenzhen, china) [], which integrates the mascot percolator [] algorithm. simultaneously, a false discovery rate (fdr) analysis was performed using the strategy […]

PMCID: 5790011
PMID: 29382883
DOI: 10.1038/s41598-018-20065-1

[…] interval (pā€‰<ā€‰0.05) with a false discovery rate (fdr) estimation ā‰¤1.04% were counted as being successfully identified. each identified positive protein contained at least one unique peptide. iquant software was used to quantitatively analyze the labeled peptides with isobaric tags. it integrates mascot percolator and advanced statistical algorithms to process the ms/ms signals generated […]

PMCID: 5705591
PMID: 29184116
DOI: 10.1038/s41598-017-16718-2

[…] 1.4 software. the false discovery rate (fdr) of protein identification was set less than 0.01. at least one unique peptide was required for each identified protein., an automated software called iquant for quantitatively analyzing the labeled peptides with isobaric tags. it integrates mascot percolator and advanced statistical algorithms to process the ms/ms signals generated […]

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IQuant institution(s)
BGI-Shenzhen, Shenzhen, China

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