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IQuant specifications


Unique identifier OMICS_10390
Name IQuant
Software type Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Windows
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes




No version available



  • person_outline Dr. Siqi Liu

Publication for IQuant

IQuant citations


Customized Peptide Biomaterial Synthesis via an Environment Reliant Auto Programmer Stigmergic Approach

PMCID: 5951493
PMID: 29659507
DOI: 10.3390/ma11040609

[…] albumin (66 kd, sds-page marker from sigma-aldrich, cleveland, oh, usa) was added to an ultra-low molecular-weight standard. the protein bands on the coomassie blue stained gel were analyzed using iquant capture 300 software (ge healthcare, buckinghamshire, uk). the electrophoresis was performed in triplicate to authenticate the self-organized peptides. , the lyophilized matter of in-solution […]


Integrated analysis of transcriptome and proteome changes related to the Ogura cytoplasmic male sterility in cabbage

PLoS One
PMCID: 5846740
PMID: 29529074
DOI: 10.1371/journal.pone.0193462

[…] da for ms scans and 100~1800 da for ms 2 scans., protein identification was analyzed with the cutoff: mascot percolator [] q-value < = 0.01 and protein quantification was applied using bgi's iquant []. proteins with a 1.2 fold change and a q-value of less than 0.05 were determined as differentially expressed proteins (deps)., as with our previous cytological analysis of the anthers […]


iTRAQ Based Proteomic Analysis Reveals Potential Regulation Networks of IBA Induced Adventitious Root Formation in Apple

Int J Mol Sci
PMCID: 5877528
PMID: 29495482
DOI: 10.3390/ijms19030667

[…] each confident protein identification involves at least one unique peptide with a confidence interval ≥95% according to the mascot probability scores. , protein quantitation was performed using iquant software (v2.2.1, bgi-shenzhen, shenzhen, china) [], which integrates the mascot percolator [] algorithm. simultaneously, a false discovery rate (fdr) analysis was performed using the strategy […]


Integrated transcriptomic and proteomic analyses reveal potential mechanisms linking thermal stress and depressed disease resistance in the turbot Scophthalmus maximus

Sci Rep
PMCID: 5790011
PMID: 29382883
DOI: 10.1038/s41598-018-20065-1

[…] interval (p < 0.05) with a false discovery rate (fdr) estimation ≤1.04% were counted as being successfully identified. each identified positive protein contained at least one unique peptide. iquant software was used to quantitatively analyze the labeled peptides with isobaric tags. it integrates mascot percolator and advanced statistical algorithms to process the ms/ms signals generated […]


Proteomic and microRNA Transcriptome Analysis revealed the microRNA SmyD1 network regulation in Skeletal Muscle Fibers performance of Chinese perch

Sci Rep
PMCID: 5705591
PMID: 29184116
DOI: 10.1038/s41598-017-16718-2

[…] 1.4 software. the false discovery rate (fdr) of protein identification was set less than 0.01. at least one unique peptide was required for each identified protein., an automated software called iquant for quantitatively analyzing the labeled peptides with isobaric tags. it integrates mascot percolator and advanced statistical algorithms to process the ms/ms signals generated […]


Critical role of the HDAC6–cortactin axis in human megakaryocyte maturation leading to a proplatelet formation defect

Nat Commun
PMCID: 5702605
PMID: 29176689
DOI: 10.1038/s41467-017-01690-2

[…] signaling, catalog number 4353), and anti-hsc70 (abcam, ab19136), followed by revelation by horseradish peroxidase-linked secondary antibodies and chemiluminescent hrp substrate (millipore) using iquant instrument (ge healthcare)., cd41+ cells were sorted on day 8 and treated with 1 µm of either tubastatin a or acy1215 for 48 h. cells were then harvested and washed twice with ice-cold pbs […]

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IQuant institution(s)
BGI-Shenzhen, Shenzhen, China

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