IRclassifier specifications

Information


Unique identifier OMICS_07722
Name IRclassifier
Alternative name Intron Retention classifier
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Requirements
Bedtools
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Yang Bai

Publication for Intron Retention classifier

IRclassifier citation

library_books

Union Exon Based Approach for RNA Seq Gene Quantification: To Be or Not to Be?

2015
PLoS One
PMCID: 4641603
PMID: 26559532
DOI: 10.1371/journal.pone.0141910

[…] higher than rsem_rpkm.The emergence of RNA-seq provides tremendous opportunities for researchers to detect intron retention (IR) events on a genome-wide scale. Bai et al. [] have developed IRcall and IRclassifier to detect IR events from RNA-seq data. The methods combine together gene expression information, read coverage within an intron, and read counts (within introns, within flanking exons, su […]

IRclassifier institution(s)
School of Computer Science and Technology, Harbin Institute of Technology, Nan Gang District, Harbin, China

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