iRNAm5C-PseDNC statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left RNA methylation prediction chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

iRNAm5C-PseDNC specifications

Information


Unique identifier OMICS_18034
Name iRNAm5C-PseDNC
Alternative name identify RNA 5-methylcytosine modification sites Pseudo DiNucleotide Composition
Interface Web user interface
Restrictions to use None
Input data Sequences of query nucleosides.
Input format FASTA
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Xuan Xiao <>

Publication for identify RNA 5-methylcytosine modification sites Pseudo DiNucleotide Composition

iRNAm5C-PseDNC in publication

PMCID: 5915569
PMID: 29720995
DOI: 10.3389/fpls.2018.00519

[…] a rigorous independent testing showed that pea-m5c (accuracy [acc] = 0.835, matthews correlation coefficient [mcc] = 0.688) is remarkably superior to the recently developed m5c predictor irnam5c-psednc (acc = 0.665, mcc = 0.332). pea-m5c has been applied to predict candidate m5c modifications in annotated arabidopsis transcripts. further analysis of these m5c candidates showed […]


To access a full list of publications, you will need to upgrade to our premium service.

iRNAm5C-PseDNC institution(s)
Department of Computer Science and Bond Life Science Center, University of Missouri, Columbia, MO, USA; Computer Department, Jingdezhen Ceramic Institute, Jingdezhen, China; Gordon Life Science Institute, Boston, MA, USA; Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China; Center of Excellence in Genomic Medicine Research (CEGMR), King Abdulaziz University, Jeddah, Saudi Arabia
iRNAm5C-PseDNC funding source(s)
This work was partially supported by the National Nature Science Foundation of China (Nos. 61261027, 61300139, 31560316), the scholarship award of the State Scholarship Fund (No.201508360047), the Graduated Innovation Fund of the Jingdezhen Ceramic Institute (JYC201521).

iRNAm5C-PseDNC reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review iRNAm5C-PseDNC