Protocols

iRNAm5C-PseDNC specifications

Information


Unique identifier OMICS_18034
Name iRNAm5C-PseDNC
Alternative name identify RNA 5-methylcytosine modification sites Pseudo DiNucleotide Composition
Interface Web user interface
Restrictions to use None
Input data Sequences of query nucleosides.
Input format FASTA
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Xuan Xiao

Publication for identify RNA 5-methylcytosine modification sites Pseudo DiNucleotide Composition

iRNAm5C-PseDNC citation

call_split

Transcriptome Wide Annotation of m5C RNA Modifications Using Machine Learning

2018
Front Plant Sci
PMCID: 5915569
PMID: 29720995
DOI: 10.3389/fpls.2018.00519
call_split See protocol

[…] The iRNAm5C-PseDNC is only available m5C predictor that aims to accurately predict m5C modifications in mammalian genomes. It was constructed using the RF algorithm with only PseDNC features, and was trai […]

iRNAm5C-PseDNC institution(s)
Department of Computer Science and Bond Life Science Center, University of Missouri, Columbia, MO, USA; Computer Department, Jingdezhen Ceramic Institute, Jingdezhen, China; Gordon Life Science Institute, Boston, MA, USA; Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China; Center of Excellence in Genomic Medicine Research (CEGMR), King Abdulaziz University, Jeddah, Saudi Arabia
iRNAm5C-PseDNC funding source(s)
This work was partially supported by the National Nature Science Foundation of China (Nos. 61261027, 61300139, 31560316), the scholarship award of the State Scholarship Fund (No.201508360047), the Graduated Innovation Fund of the Jingdezhen Ceramic Institute (JYC201521).

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