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iRODS specifications

Information


Unique identifier OMICS_35297
Name iRODS
Alternative name Integrated Rule-Oriented Data System
Stability Stable
Maintained Yes

Versioning


No version available

Publication for Integrated Rule-Oriented Data System

iRODS citations

 (7)
library_books

A New Framework and Prototype Solution for Clinical Decision Support and Research in Genomics and Other Data intensive Fields of Medicine

2016
PMCID: 4862762
PMID: 27195307
DOI: 10.13063/2327-9214.1198

[…] (3) the CANVAS (CAroliNa Variant Annotation Store) and AnnoBot (Annotation Bot) system. Several other technologies are also integral to NCGENES but were developed prior to NCGENES; these include the integrated Rule-Oriented Data System (iRODS)– and the Secure Medical Workspace (SMW)., provides a high-level overview of NCGENES operations in terms of the underlying informatics infrastructure, overa […]

library_books

Big Data: the challenge for small research groups in the era of cancer genomics

2015
Br J Cancer
PMCID: 4815885
PMID: 26492224
DOI: 10.1038/bjc.2015.341

[…] perform short-term or modest-sized NGS projects. Alternative data management systems that allow users to integrate large-scale genomics data and various metadata are TranSMART (), BioMart () and the Integrated Rule-Oriented Data System (). These platforms provide extensive modules for data integration, and have been employed globally for cost-effective, collaborative data storage for small-scale […]

library_books

A scalable neuroinformatics data flow for electrophysiological signals using MapReduce

2015
Front Neuroinform
PMCID: 4360820
PMID: 25852536
DOI: 10.3389/fninf.2015.00004

[…] y as a potential common representation standard, to store the signal data. The INCF dataspace is a cloud-based signal data storage platform that supports exchange and storage of signal data using the Integrated Rule-Oriented Data System (iRODS) software (). The Carmen project has developed a workflow tool to support analysis of neuroscience data in a virtual laboratory using a library of services […]

library_books

Data access for the 1,000 Plants (1KP) project

2014
GigaScience
PMCID: 4306014
PMID: 25625010
DOI: 10.1186/2047-217X-3-17

[…] shared with others to let them to visualize the tree.For more advanced users wanting to perform more complicated procedures, iPlant capabilities are available from a command line. It is based on the integrated rule-oriented data system (iRODS) []. All the user has to do is install a command line utility, icommands, which mimics UNIX and enables high-speed parallel data transfers. Instructions are […]

library_books

Managing, Analysing, and Integrating Big Data in Medical Bioinformatics: Open Problems and Future Perspectives

2014
Biomed Res Int
PMCID: 4165507
PMID: 25254202
DOI: 10.1155/2014/134023

[…] y network devices. Thus, data loss or corruption can occur.GSI (Grid Security Infrastructure) [] has been designed for the authentication via X.509 certificates and assures the secure access to data. iRODS and XtreemFS, for example, support GSI for authentication. Both use enhanced replication mechanisms to warrant the integrity of data including the prevention of loss. Amazon S3 follows a usernam […]

library_books

A digital repository with an extensible data model for biobanking and genomic analysis management

2014
BMC Genomics
PMCID: 4083403
PMID: 25077808
DOI: 10.1186/1471-2164-15-S3-S3

[…] erogeneous storage environments that allow users to store data in different locations with different storage devices without any need for them to be aware of specific low-level data access mechanisms.iRODS [] is an open source data grid middleware developed by the Data Intensive Cyber Environments (DICE) research group. An autonomous iRODS system - named iRODS Zone - is constituted by at least an […]

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