IRscope statistics

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IRscope specifications

Information


Unique identifier OMICS_28440
Name IRscope
Interface Web user interface
Restrictions to use None
Input data An accession number and a GeneBank file or a file of annotation and a genome file.
Output data A plot.
Output format JPG
Programming languages R
Computer skills Basic
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Ali Amiryousefi <>

Information


Unique identifier OMICS_28440
Name IRscope
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Ali Amiryousefi <>

Publication for IRscope

IRscope in publications

 (5)
PMCID: 5070848
PMID: 27760210
DOI: 10.1371/journal.pone.0163874

[…] we acquired spectra in the spectral region that contains the specific absorption bands of c-h bonds (c-h stretching bands) because such bonds are characteristic for organic compounds. a bruker irscope ii microscope with a 20x germanium-atr objective connected to an ft-ir equinox 55 spectrometer was used for this infrared atr surface analysis (maximum size of the analyzed area 100 μm2, […]

PMCID: 5017131
PMID: 27609323
DOI: 10.1038/srep33119

[…] out as previously described. briefly, mid-ir spectra were acquired in transmission mode using an ifs 28/b ft-ir spectrometer from bruker (bruker optics gmbh, ettlingen germany) that was linked to an irscope ii infrared microscope (bruker). ir microspectra were recorded with a spatial resolution of approximately 80 μm. nominal spectral resolution was 4 cm−1, and the zero filling factor was 4. […]

PMCID: 4956398
PMID: 27453944
DOI: 10.1126/sciadv.1600341

[…] measurements were carried out on the ir2 beamline of the anka synchrotron facility, karlsruhe, germany. spectra were acquired using a fourier transform ir ifs 66v/s spectrometer coupled to an irscope ii microscope (bruker optics). the spectrometer was equipped with a kbr beamsplitter; the spectral resolution was set to 4 cm−1, and 512 scans were accumulated for each spectrum at a scanner […]

PMCID: 3866372
PMID: 24353978
DOI: 10.1186/2193-1801-2-661

[…] solutions, the wells, hereafter μ-cells, were sealed with a caf2 window (see inset of figure ). spectra were collected with resolution of 2 cm−1 at 24°c by means of an infrared microscope (bruker irscope) coupled with a ft-ir interferometer (bruker ifs 66v).figure 1, since a thin film of solution wet the silicon surface outside of the wells thus altering the effective thickness […]

PMCID: 4021956
PMID: 24957060
DOI: 10.3390/membranes3040311

[…] cm−1 spectral range) microscpectrometer horiba jobin yvon raman microspectrometers using 458 nm, 514 nm and 532 nm excitation laser lines. , ir transmission spectra were recorded using ft equinox 55 irscope bruker optics microspectrometer. powder dispersed in csi matrix and/or polished thin ceramics are used., more experimental details are available in our previous works [,,,]., […]


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IRscope institution(s)
Organismal Evolutionary Biology Research Program, Faculty of Biology and Environmental Sciences, Viikki Plant Science Centre, University of Helsinki, Finland; Finnish Museum of Natural History, University of Helsinki, Helsinki, Finland
IRscope funding source(s)
Supported by the University of Helsinki DPPS graduate school.

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