IRscope specifications

Information


Unique identifier OMICS_28440
Name IRscope
Interface Web user interface
Restrictions to use None
Input data An accession number and a GeneBank file or a file of annotation and a genome file.
Output data A plot.
Output format JPG
Programming languages R
Computer skills Basic
Stability Stable
Maintained Yes

Download


github.png

Maintainer


  • person_outline Ali Amiryousefi

Information


Unique identifier OMICS_28440
Name IRscope
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Maintained Yes

Download


download.png

Versioning


No version available

Maintainer


  • person_outline Ali Amiryousefi

Publication for IRscope

IRscope citation

library_books

The chloroplast genome sequence of bittersweet (Solanum dulcamara): Plastid genome structure evolution in Solanaceae

2018
PLoS One
PMCID: 5919006
PMID: 29694416
DOI: 10.1371/journal.pone.0196069

[…] astid genome sequences were compared and aligned using mVISTA online tools [], while the expansion and contraction of the inverted repeat (IR) regions at junction sites was examined and plotted using IRscope []. We identified and located repeat sequences (n ≥30 bp and a sequence identity ≥ 90%) found in the bittersweet plastome using REPuter []. Repeats larger than 10 bp were classified into the f […]

IRscope institution(s)
Organismal Evolutionary Biology Research Program, Faculty of Biology and Environmental Sciences, Viikki Plant Science Centre, University of Helsinki, Finland; Finnish Museum of Natural History, University of Helsinki, Helsinki, Finland
IRscope funding source(s)
Supported by the University of Helsinki DPPS graduate school.

IRscope reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review IRscope