Whole genome secondary analysis on Illumina sequencing platforms. Official website Specifications Publications Classification
Specifications Desktop app Software type: Package Interface: Command line interface Restrictions to use: None Biological technology: Illumina Operating system: Unix/Linux Programming languages: C++ Computer skills: Advanced Stability: Stable Write a review View all reviews 0 user review Write a review about this tool Sign up for free to join and share with our community.Already have an account? Sign in to review this tool. Cancel No review has been posted. Open an issue View all issues 0 issue Open an issue about this tool Sign up for free to join and share with our community.Already have an account? Sign in to open an issue. Cancel No open issue. Publications (Raczy et al., 2013) Isaac: ultra-fast whole-genome secondary analysis on Illumina sequencing platforms. Bioinformatics. PMID: 23736529 Classification High-throughput sequencing Whole-genome sequencing Read alignment Literature (Fonseca et al., 2012) Tools for mapping high-throughput sequencing data. Bioinformatics. PMID: 23060614 (Li and Homer, 2010) A survey of sequence alignment algorithms for next-generation sequencing. Briefings in bioinformatics. PMID: 20460430 (Ruffalo et al., 2011) Comparative analysis of algorithms for next-generation sequencing read alignment. Bioinformatics. PMID: 21856737 (Hatem et al., 2013) Benchmarking short sequence mapping tools. BMC bioinformatics. PMID: 23758764 88 related tools A Long Fra… OMIC_08447 Anfo OMIC_08846 Arioc OMIC_08786 Artificial… OMIC_09783 Automation OMIC_07647 BALAUR OMIC_11421 BarraCUDA OMIC_00650 Basic Alig… OMIC_09275 Basic Loca… OMIC_05134 BatAlign OMIC_09206 Batman-Seq OMIC_00651 Benchmark OMIC_07005 benchNGS OMIC_08347 BFAST OMIC_00652 BigBWA OMIC_09821 BIMA OMIC_05378 BioBloom t… OMIC_05531 BitMapper OMIC_08939 Bowtie OMIC_00653 Burrows-Wh… OMIC_00654 BWA-PSSM OMIC_03608 Cache ASsi… OMIC_00655 CGAP-Align OMIC_05480 CloudAlign… OMIC_00656 CloudBurst OMIC_00657 CUSHAW2 OMIC_00658 CUSHAW3 OMIC_08448 di-base re… OMIC_00661 DIDA OMIC_07354 DistMap OMIC_00660 Extended R… OMIC_00662 FANSe2 OMIC_04840 Genomic Ne… OMIC_00664 Global Ali… OMIC_00663 GNU Backwa… OMIC_07485 GPU-copy n… OMIC_11087 GSNAP OMIC_00665 Halvade OMIC_08309 Hobbes OMIC_02588 HPG Aligne… OMIC_05479 Hybrid Ind… OMIC_00666 Mapping an… OMIC_00668 Mapping It… OMIC_08847 marginAlig… OMIC_07582 MaxSSmap OMIC_06479 MICA-align… OMIC_08621 MOSAIK OMIC_00669 MPscan OMIC_00670 mrFAST/mrs… OMIC_00671 NanoOK OMIC_09997 NextGenMap OMIC_00672 Optimal Se… OMIC_10878 ParallEl A… OMIC_10189 Parallel G… OMIC_00659 Parallel P… OMIC_00677 PASS OMIC_00673 PEAR OMIC_00674 PerM OMIC_00675 PIA OMIC_00676 Queries an… OMIC_00678 Rapid Ampl… OMIC_04127 RazerS OMIC_00679 REAL OMIC_00680 regional H… OMIC_10873 RMAP OMIC_00681 RNFtools OMIC_09920 Scalable N… OMIC_00687 SEAL OMIC_00682 Segemehl OMIC_00683 SeqAlto OMIC_09276 SeqMap OMIC_00684 Sequence S… OMIC_00690 SHRiMP OMIC_00685 SMALT OMIC_00686 SOAP3 OMIC_00688 SOAPaligne… OMIC_00689 Stampy OMIC_00691 SToRM OMIC_00692 Subread OMIC_01255 TAPyR OMIC_00693 Teaser OMIC_09840 Torrent Ma… OMIC_00694 TreQ OMIC_00695 VelociMapp… OMIC_00696 Wisconsin�… OMIC_00697 YAHA OMIC_04675 Yet anothe… OMIC_08007 ZOOM OMIC_05403 Show more related tools (84)