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Whole genome secondary analysis on Illumina sequencing platforms.

Software type:
Package
Interface:
Command line interface
Restrictions to use:
None
Biological technology:
Illumina
Operating system:
Unix/Linux
Programming languages:
C++
Computer skills:
Advanced
Stability:
Stable
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  • (Raczy et al., 2013) Isaac: ultra-fast whole-genome secondary analysis on Illumina sequencing platforms. Bioinformatics.
    PMID: 23736529
  • (Fonseca et al., 2012) Tools for mapping high-throughput sequencing data. Bioinformatics.
    PMID: 23060614
  • (Li and Homer, 2010) A survey of sequence alignment algorithms for next-generation sequencing. Briefings in bioinformatics.
    PMID: 20460430
  • (Ruffalo et al., 2011) Comparative analysis of algorithms for next-generation sequencing read alignment. Bioinformatics.
    PMID: 21856737
  • (Hatem et al., 2013) Benchmarking short sequence mapping tools. BMC bioinformatics.
    PMID: 23758764

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