IVC specifications

Unique identifier:
OMICS_05481
Software type:
Package/Module
Restrictions to use:
None
Input format:
BAM
Output format:
VCF
Operating system:
Unix/Linux
License:
BSD 2-clause “Simplified” License
Version:
1.0.7
Maintained:
No
Name:
Isaac Variant Caller
Interface:
Command line interface
Input data:
An aligned sequencing reads. These reads must be sorted and indexed. PCR duplicate removal is recommended. IVC does its own read realignment around indels so it is not necessary to pre-process the data with any such step.
Output data:
The output of the workflow is a single file describing all sites and indels in the genome.
Biological technology:
Illumina
Programming languages:
C++
Computer skills:
Advanced
Stability:
Stable

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IVC support

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This tool is not maintained anymore.

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Publications

Institution(s)

Illumina United Kingdom, Chesterford Research Park, Essex, UK ; Illumina, Inc., San Diego, CA, USA

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