iSAFE specifications

Information


Unique identifier OMICS_20823
Name iSAFE
Alternative name integrated Selection of Allele Favored by Evolution
Restrictions to use None
Input data A binary SNP matrix with each row corresponding to a haplotype and each column to a mutation, and entries corresponding to the allelic state.
Input format hap, vcf
Output data A non-negative iSAFE-score for each mutation, according to its likelihood of being the favored variant of the selective sweep.
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Version 0.1
Stability Stable
Requirements numpy, pandas, bcftools
Maintained Yes

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Maintainer


  • person_outline Ali Akbari <>

Publication for integrated Selection of Allele Favored by Evolution

iSAFE institution(s)
Department of Electrical & Computer Engineering, University of California, San Diego, La Jolla, CA, USA; Department of Computer Science & Engineering, University of California, San Diego, La Jolla, CA, USA
iSAFE funding source(s)
Supported in part by grants from the NSF (IIS-1318386 and DBI-1458557), and from the NIH (R01GM114362).

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