ISCA specifications
Information
| Unique identifier | OMICS_28792 |
|---|---|
| Name | ISCA |
| Alternative name | Inheritance State Consistency Analysis |
| Software type | Application/Script |
| Interface | Command line interface |
| Restrictions to use | None |
| Operating system | Unix/Linux |
| Computer skills | Advanced |
| Version | 0.1.9 |
| Stability | Stable |
| Maintained | No |
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Additional information
ISCA citations
(2)Genomic architecture of inflammatory bowel disease in five families with multiple affected individuals
[…] abilities for shared segments are 0.07 and 0.01 in family 1 and 2, respectively, suggesting that no identical-by-descent regions are expected other than causative segments in these families. However, Inheritance State Consistency Analysis on the sequence data identified a 2.6 Mb (GRCh37 chr6: 80,111,322–82,671,825) and a 4.5 Mb (GRCh37 chr6: 43,216,439–47,754,537) shared segment in family 1, spann […]
Relationship Estimation from Whole Genome Sequence Data
[…] ta, we first inferred IBD segments between each pair of individuals with three different methods: Genetic Error-tolerant Regional Matching with Linear-time Extension (GERMLINE), Beagle's fastIBD, and Inheritance State Consistency Analysis (ISCA) –. We then applied ERSA separately to each of the three resulting IBD-segment datasets. For our initial analysis of control genomes from putatively unrela […]
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