ISG specifications

Information


Unique identifier OMICS_11189
Name ISG
Alternative name In Silico Genotyper
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input format FASTA, BAM, VCF, FASTQ, FASTQ.GZ
Output format matrix, FASTA
Operating system Unix/Linux
Programming languages Java
License GNU General Public License version 3.0
Computer skills Advanced
Version 0.16.10-3
Stability Stable
Requirements MUMmer, BWA, GATK
Maintained Yes

Versioning


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Documentation


Maintainer


  • person_outline Talima Pearson <>

Publication for In Silico Genotyper

ISG institution(s)
Center for Microbial Genetics and Genomics, Northern Arizona University, Flagstaff, AZ, USA; Translational Genomics Research Institute, Flagstaff, AZ, USA; Division of Systems Medicine, Stanford University School of Medicine, Stanford, CA, USA

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