Protocols

ISHAPE specifications

Information


Unique identifier OMICS_11050
Name ISHAPE
Alternative name Iterative Segmented HAPlotyping by Em
Software type Application/Script
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux, Windows
Programming languages C++
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Publication for Iterative Segmented HAPlotyping by Em

ISHAPE citation

call_split

Shape IT: new rapid and accurate algorithm for haplotype inference

2008
BMC Bioinformatics
PMCID: 2647951
PMID: 19087329
DOI: 10.1186/1471-2105-9-540
call_split See protocol

[…] algorithm in the software package Shape-IT publicly available at . We have extensively compared Shape-IT with the widely used haplotype inference software 2snp [], Gerbil [], Fastphase [], PL-EM [], Ishape [] and Phase v2.1 [,] on 3 kinds of datasets described hereafter. All the software were run with default parameters on a standard 2 GHz computer with 1 Go of RAM.In the comparisons, we have tri […]

ISHAPE institution(s)
Chaire de Bioinformatique, Conservatoire National des Arts et Métiers, Paris, France; Unité INSERM U736, Centre de Recherche des Cordeliers, Paris, France; Unité INSERM U707, Paris, France; Laboratory of Genomic Diversity, Frederick, MD, USA; Unité INSERM U841, Créteil, France

ISHAPE reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review ISHAPE