ISMARA specifications

Information


Unique identifier OMICS_03492
Name ISMARA
Alternative name Integrated System for Motif Activity Response Analysis
Interface Web user interface
Restrictions to use Academic or non-commercial use
Input data Expression data or ChIP-seq data from a set of biological samples.
Input format CEL,BAM,SAM,BED,FASTQ
Computer skills Basic
Stability Stable
Maintained Yes

Maintainers


  • person_outline ISMARA Team <>
  • person_outline Mikhail Pachkov <>
  • person_outline Heinz Stockinger <>

Information


Unique identifier OMICS_03492
Name ISMARA
Alternative name Integrated System for Motif Activity Response Analysis
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input format CEL,BAM,SAM,BED
Operating system Unix/Linux, Mac OS
Programming languages Python, R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.2.2
Stability Stable
Source code URL https://gitlab.isb-sib.ch/ST/ismara-client
Maintained Yes

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Maintainers


  • person_outline ISMARA Team <>
  • person_outline Mikhail Pachkov <>
  • person_outline Heinz Stockinger <>

Publications for Integrated System for Motif Activity Response Analysis

library_books

The ISMARA client.

2016 F1000Res
PMID: 28232860
DOI: 10.12688/f1000research.9794.1
ISMARA institution(s)
SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland; Biozentrum, University of Basel & SIB Swiss Institute of Bioinformatics, Basel, Switzerland
ISMARA funding source(s)
Supported by Swiss State Secretariat for Education, Research and Innovation (SERI), in part, the University of Basel, and by the CellPlasticity and BrainstemX grant of the Swiss National Science Foundation in the context of the SystemsX.ch initiative.

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