iso-kTSP specifications

Information


Unique identifier OMICS_07556
Name iso-kTSP
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Eduardo Eyras

Publication for iso-kTSP

iso-kTSP citation

call_split

TSIS: an R package to infer alternative splicing isoform switches for time series data

2017
Bioinformatics
PMCID: 5860037
PMID: 29028262
DOI: 10.1093/bioinformatics/btx411
call_split See protocol

[…] e switch and is calculated as the sum of the frequencies of two possible scenarios that one isoform is more or less abundant than the other in the two intervals adjacent to a switch point, as used in iso-kTSP (). S1(isoi,isoj|I1,I2)=|p(isoi>isoj|I1)+p(isoiisoj|I1) and p(isoi

iso-kTSP institution(s)
Computational Genomics, Universitat Pompeu Fabra, Barcelona, Spain; Universitat Polit├Ęcnica de Catalunya, Barcelona; Catalan Institution for Research and Advanced Studies, Barcelona, Spain

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