isoblat statistics

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Associated diseases

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isoblat specifications

Information


Unique identifier OMICS_02154
Name isoblat
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Illumina, Life Technologies, Pacific Biosciences, Roche
Operating system Unix/Linux, Mac OS, Windows
Programming languages Perl
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Requirements
BLAT
Source code URL https://raw.githubusercontent.com/josephryan/isoblat/master/isoblat
Maintained Yes

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isoblat in publications

 (2)
PMCID: 5241972
PMID: 28100185
DOI: 10.1186/s12864-016-3448-x

[…] of these assemblies were assessed using multiple tools: 1) methods based on the mapping of read datasets to an assembly, frc bam [] and reapr []; 2) by comparing a transcriptome to an assembly, isoblat (using the newbler transcriptome, see ) []; 3) by comparing the assembly to a linkage map (see ); 4) and determining presence and completeness of conserved eukaryotic and actinopterygii […]

PMCID: 4987106
PMID: 27289101
DOI: 10.1093/gbe/evw134

[…] the cegma pipeline v.2.4 () and with the core arthropods gene set in the busco pipeline v.1.1 (). de novo transcripts, generated in a previous study (), were mapped to the genome scaffolds using the isoblat tool v.3.0 with default parameters ()., in addition, the mitochondrial genome was assembled with mitobim v.1.6 () using the mitochondrial genome of another springtail orchesella villosa () […]


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isoblat institution(s)
Whitney Laboratory for Marine Bioscience, University of Florida, St Augustine, FL, USA

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