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IsoDOT specifications

Information


Unique identifier OMICS_07370
Name IsoDOT
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Wei Sun

Publication for IsoDOT

IsoDOT citation

library_books

Prediction of human population responses to toxic compounds by a collaborative competition

2015
Nat Biotechnol
PMCID: 4568441
PMID: 26258538
DOI: 10.1038/nbt.3299

[…] vailable for 337 of the cell lines (representing the CEU, GBR, TSI, and YRI subpopulations) as dataset E-GEUV-1 in the ArrayExpress repository. The mapped reads files (BAM format) were downloaded and IsoDOT was used to count the reads of each non-overlapping exon, which has been preprocessed in IsoDOT library files. Read counts for each gene were generated by summing the read counts for all of tha […]


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IsoDOT institution(s)
Department of Statistics and Operations Research, Department of Genetics, Department and Biostatistics, Chapel Hill, USA; State University,Department of Biostatistics, University of Minnesota, USA; SAS Institute Inc,Department of Applied Mathematics and Statistics, Stony Brook University, USA

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