Protocols

ISOexpresso specifications

Information


Unique identifier OMICS_29627
Name ISOexpresso
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainers


  • person_outline Sangwoo Kim
  • person_outline Seok Yang

Additional information


http://wiki.tgilab.org/ISOexpresso/main.php?cat=tutorial

Publication for ISOexpresso

ISOexpresso citations

 (2)
library_books

Bioinformatics challenges and perspectives when studying the effect of epigenetic modifications on alternative splicing

2018
PMCID: 5915717
PMID: 29685977
DOI: 10.1098/rstb.2017.0073

[…] e the data that can be analysed, such as ArrayExpress []. The Expression Atlas provides a map of gene expression over different tissues and cell types based on data in ArrayExpress [,]. Recently, the ISOexpresso database has been released that gives analogous information but at an isoform level []. This includes isoform coverage for different tissue types or disease status. MiasDB contains interac […]

call_split

Oestrogen receptor beta isoform expression in sporadic colorectal cancer, familial adenomatous polyposis and progressive stages of colorectal cancer

2017
BMC Cancer
PMCID: 5683223
PMID: 29132333
DOI: 10.1186/s12885-017-3688-4
call_split See protocol

[…] ssed from The Cancer Genome Atlas (TCGA: level 3 RNA sequencing database) (t test). An isoform specific analysis of ESR2 was implemented using Isoform Expression View (normal-tumor comparison) of the ISOexpresso tool (http://wiki.tgilab.org/ISOexpresso/) []. […]

ISOexpresso institution(s)
Severance Biomedical Science Institute, Yonsei University College of Medicine, Seoul, Korea; Brain Korea 21 PLUS Project for Medical Sciences, Yonsei University College of Medicine, Seoul, Korea
ISOexpresso funding source(s)
Supported by a grant of the Korea Health Technology R&D Project through the Korea Health Industry Development Institute (KHIDI) and by the Ministry of Health & Welfare, Republic of Korea (grant number: HI15C1234).

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