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Isoform-level ribosome occupancy estimation software tools | Ribosome profiling data analysis

Ribosome profiling is a useful technique for studying translational dynamics and quantifying protein synthesis. Applications of this technique have shown that ribosomes are not uniformly distributed along mRNA transcripts. Understanding how each…
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Ribomap
Desktop

Ribomap

Quantifies isoform-level ribosome profiles. Ribomap is a conceptual framework…

Quantifies isoform-level ribosome profiles. Ribomap is a conceptual framework and software that produces accurate isoform specific ribosome profiles by accounting for multi-mapping sequence reads…

G T A T C G C T A
riboShape
Desktop

riboShape

Predicts ribosome footprint profile shapes from transcript sequences. Riboshape…

Predicts ribosome footprint profile shapes from transcript sequences. Riboshape is a suite of algorithms. It applies kernel smoothing to codon sequences to build predictive features, and uses these…

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